Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1444 |
Symbol | gcd |
ID | 1045820 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 1644941 |
End bp | 1647352 |
Gene Length | 2412 bp |
Protein Length | 803 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637144845 |
Product | glucose dehydrogenase (pyrroloquinoline-quinone) |
Protein accession | NP_743602 |
Protein GI | 26988177 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4993] Glucose dehydrogenase |
TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.244266 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCACTG AAGGTGCGAA CCAAGGAAGC CGCTGGCTAC CGCGCCTGAT TGGCGCGCTG CTGTTGCTGA TGGGCCTGGC CCTGCTGGCC GGCGGTATCA AGCTGAGCCA GCTGGGCGGA TCGCTGTACT ACCTGATCGC CGGTATTGGC TTTGCCCTTT CGGGCGTCCT GCTGCTGGCC CAACGCCAGA TCGCCCTGGG CCTGTATGGC CTGGTGCTGC TGGGCAGCAC CGTGTGGGCC CTGTTCGAAG TAGGCCTGGA CTGGTGGCAA CTGGTGCCAC GGCTGGCTAT CTGGTTCGCC ATCGGCGTGG TGTTGCTGCT GCCGTGGGCA CGTCGCCCGC TGATCGGCCC AGCCAGCAAA GCCAACACTG CACTGCTCGG CGTGGCAGTG GTCGCTTCGG GCGCTTGCGC GCTGGCCAGC CAGTTCACCC ATCCCGGTGA AGTGTTCGGC GAACTGGGCC GCGACAGCAG CGAAATGGCC AGCGCCGCCC CGGCCATGCC CGACGGCGAA TGGCAGGCCT ACGGCCGTAC CGAGCATGGC GACCGCTACT CGCCGCTGCG CCAGATCACC CCGCAGAACG CCTACCGTCT GGAAGAAGCC TGGCGCATTC GCACCGGTGA TCTGCCAACC GAAAACGACC CGGTGGAGCT GACCAACCAG AACACCCCGC TGAAGGTCAA CGGCATGCTT TACGCCTGCA CCGCGCACAG TCGCCTGCTG GCGCTGGACC CGGACACTGG CGCAGAAATC TGGCGCTACG ACCCGCAGGT CAAGAGCCCG ACCGGCACCT TCAAGGGCTT TGCCCACATG ACCTGCCGTG GCGTCTCGTA CTATGACGAA AACCGCTACG TCAGCCGCGA CGGCAGCCCG GCGCCGAAAA TTACCGATGC AGGCCAGGCC GTGGCCCAAG CCTGCCCGCG TCGCCTCTAT CTGCCTACCG CGGATGCCCG CCTGATCGCC ATCAACGCCG ACAACGGCAA GGTCTGCGAA GGCTTCGCCA ACCAGGGCGT GATCGACCTC ACCACCGGCA TTGGCCCATT CACCGCCGGC GGCTATTACT CCACCTCGCC TGCTGCGATT ACCCGTGACC TGGTGATCAT CGGTGGCCAC GTCACCGACA ACGAGTCGAC CAATGAGCCG TCCGGGGTGA TCCGCGCCTA CGACGTGCAC GACGGCCACC TGGTGTGGAA CTGGGACAGT AACAACCCGG ACGACACCAA GCCATTGGCT GCCGGCAAAA TGTACAGCCG CAACTCGGCC AACATGTGGT CGATCGCCAG CGTCGACGAA GACCTTGGCA TGATCTACCT GCCGCTGGGC AACCAGACCC CGGACCAGTG GGGCGCCGAC CGCACCCCGG GCGCCGAGAA GTACAGCGCC GGCGTGGTCG CCCTTGACCT GGCCACCGGC AAGGCACGCT GGAACTATCA GTTCACCCAC CACGACCTGT GGGACATGGA CGTCGGCAGC CAGCCGACCC TGGTACACCT GAAAACCGAC GATGGTGTGA AACCGGCGAT CATCGTACCG ACCAAGCAAG GCAGCCTGTA CGTGCTCGAC CGCCGCGACG GTACGCCAAT CGTGCCGATC CGCGAGATCC CCACCCCACA AGGCGCAGTG GAAGGCGACC ACACCTCGCC CACCCAGGCC CGCTCCGACC TCAACCTGCT CGGCCCAGAG CTGACCGAAC AGGCCATGTG GGGCGCCACG CCTTTCGACC AGATGCTGTG CCGCATCCAG TTCCGCGAAC TGCGCTACGA AGGCCAGTAC ACCCCGCCAT CCGAACAAGG TTCGTTGGTC TACCCCGGCA ACGTCGGTGT ATTCAACTGG GGCAGCGTGT CGGTCGACCC GGTGCGCCAG CTGCTGTTCA CTTCGCCCAA CTACATGGCG TTCGTGTCGA AGATGGTCCC GCGTGAGCAG GTTGCCGAAG GCAGCAAGCG CGAAAGCGAG ACCAGCGGCG TGCAGCCGAA CACCGGCGCA CCGTATGCAG TGATCATGCA CCCGTTCATG TCGCCGCTCG GTGTACCGTG CCAGGCACCC GCCTGGGGCT ACGTCGCCGC CATCGACCTG TTCACCAACA AGGTGGTGTG GAAACACAAG AACGGCACCA CCCGCGACAG CACCCCGCTA CCGATCGGCC TGCCGGTTGG CGTGCCGAGC ATGGGTGGCT CGATCGTCAC CGCCGGTGGC GTCGGCTTCC TCAGCGGCAC GCTCGACCAG TACCTGCGCG CCTATGACGT GAACAACGGC AAGGAGTTGT GGAAAGCACG CCTGCCAGCG GGTGGCCAGG CTACGCCGAT GAGCTACACC GGCAAGGACG GCAAGCAGTA CGTGCTGGTG ACTGCCGGCG GCCATGGCTC GCTGGGCACC AAGATGGGCG ATTACATCAT TGCTTACAAA TTAGCCGAGT AA
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Protein sequence | MSTEGANQGS RWLPRLIGAL LLLMGLALLA GGIKLSQLGG SLYYLIAGIG FALSGVLLLA QRQIALGLYG LVLLGSTVWA LFEVGLDWWQ LVPRLAIWFA IGVVLLLPWA RRPLIGPASK ANTALLGVAV VASGACALAS QFTHPGEVFG ELGRDSSEMA SAAPAMPDGE WQAYGRTEHG DRYSPLRQIT PQNAYRLEEA WRIRTGDLPT ENDPVELTNQ NTPLKVNGML YACTAHSRLL ALDPDTGAEI WRYDPQVKSP TGTFKGFAHM TCRGVSYYDE NRYVSRDGSP APKITDAGQA VAQACPRRLY LPTADARLIA INADNGKVCE GFANQGVIDL TTGIGPFTAG GYYSTSPAAI TRDLVIIGGH VTDNESTNEP SGVIRAYDVH DGHLVWNWDS NNPDDTKPLA AGKMYSRNSA NMWSIASVDE DLGMIYLPLG NQTPDQWGAD RTPGAEKYSA GVVALDLATG KARWNYQFTH HDLWDMDVGS QPTLVHLKTD DGVKPAIIVP TKQGSLYVLD RRDGTPIVPI REIPTPQGAV EGDHTSPTQA RSDLNLLGPE LTEQAMWGAT PFDQMLCRIQ FRELRYEGQY TPPSEQGSLV YPGNVGVFNW GSVSVDPVRQ LLFTSPNYMA FVSKMVPREQ VAEGSKRESE TSGVQPNTGA PYAVIMHPFM SPLGVPCQAP AWGYVAAIDL FTNKVVWKHK NGTTRDSTPL PIGLPVGVPS MGGSIVTAGG VGFLSGTLDQ YLRAYDVNNG KELWKARLPA GGQATPMSYT GKDGKQYVLV TAGGHGSLGT KMGDYIIAYK LAE
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