| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1411 |
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| Symbol | |
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| ID | 1046106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 1608779 |
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| End bp | 1610260 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637144812 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | NP_743569 |
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| Protein GI | 26988144 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0895588 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTTAC GTTCCGCTCT GTTCTCGCAG CGCTCGCTGA TCGTTACCCT GCTCGTGTTA
CTGGCCTGCG GCTTCCTGGC CACCTCGCTG CTCAGCTACT CCTCCTCTCG CAGCGCCATC
CGCGACGGCA TCATCAATAC CGAATTGCCG CTGACCTCCG ACACTGTCTA CTCGGAAATC
CAGAAAGACC TGATCCGCCC GGTGCTGATC GCCTCGATGA TGGCCCAGGA CACCTTCCTG
CGCGACTGGG TGCTGTCCGG CGAGCAGCAT ACCGAACGCA TGACCCGCTA CCTGAGCGAG
GTCCTGGGCA AGCAGGACAT CTTCACGTCC TTTTTCGTGT CCGATCGCAC GCTGACCTAC
TACCAGGCCA AAGGCGTGCT CAAGCACGTC CAACCGGGCA CCTGGCGTGA TGCCTGGTAT
TTCCGTCTGC GTGAACTCAA GGCCCCTTAT GAGATCAACG TCGACCTGGA CATGGCCAAC
CAGGACAGCC TGACCGTGTT CATCAACTAC CAGGTGCACG ACTACCAGCA GCGCTTCATC
GGCGCGGCAG GCGTAGGGCT GAGCGTATCG TCGGTGGTCA AGCTGATCGA TCAGTACCAA
CGCCGCTACC AGCGCGCGGT GCTCTTCACG GATGCCAAGG GCAAGGTGCT GTTGACCGGC
TCCGAGGGTG GCCCGCATGG CTTGCAAGTC GGCCAGTTAC TTAAGGACAA CCCTGAGCTG
AAGGCCATGC TGGCCGAGCA GTGGGTGCCG GGCGAAGGCA GCCACGAGTA CCATGACAGC
GAAAACCACA GCCACTTTCT CAACGTTCGC CACCTGCCCG AACTGGACTG GTACCTGTTG
GTGGACAAAC GCGAAACCGG CGTCCTCGAC CGCATTCGCC ACGCGCTGTA CCTGAACCTG
GCGATCTGTA CGATGATCAC CCTGGTGGTG CTGGCACTGG TGCATGCCAT GGTCCGCCGC
CACCAGGCCA GCACCGAAGC CTTGGCCACG CTCGACAGCC TCACCGGCTT GTACAACCGG
CGCAGCTTCG ACCTGCTCGC CGCCCAGGCG CTGCGAGAAG CCAGGCGCGA CAGTAGCCCA
CTGGTGGCCT TGCTGATCGA TCTGGACCAC TTCAAGGCGC TGAACGACAA CCACGGCCAC
CTGGCAGGTG ACGAAGTGCT ACGCCAATTC GCCAATGTGC TGCAAGGCAG CCTGCGTCAG
TCAGATATAC TGTGCCGGTG GGGCGGTGAG GAATTCATCG TGCTGCTGCG CGAAGCTGAA
GGCCGCCAGG CCATCGAGGT GGCAGAAAAA ATCCGCCGAC GCACCGAGCA GCTGACCTTC
AGTTACGACA ACCAGCCGCT GCGGCTGACC ACCAGCATCG GCCTGAGCAG CCTGCAACCG
GGGGATACCC TGCACGCCCT GCTGACCCGC GCCGACCGCG CGCTTTATCG TGCCAAGCAG
GCTGGCCGCA ACCGTGTCTG CAGTGAAACC CGCCATGAAT GA
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| Protein sequence | MPLRSALFSQ RSLIVTLLVL LACGFLATSL LSYSSSRSAI RDGIINTELP LTSDTVYSEI
QKDLIRPVLI ASMMAQDTFL RDWVLSGEQH TERMTRYLSE VLGKQDIFTS FFVSDRTLTY
YQAKGVLKHV QPGTWRDAWY FRLRELKAPY EINVDLDMAN QDSLTVFINY QVHDYQQRFI
GAAGVGLSVS SVVKLIDQYQ RRYQRAVLFT DAKGKVLLTG SEGGPHGLQV GQLLKDNPEL
KAMLAEQWVP GEGSHEYHDS ENHSHFLNVR HLPELDWYLL VDKRETGVLD RIRHALYLNL
AICTMITLVV LALVHAMVRR HQASTEALAT LDSLTGLYNR RSFDLLAAQA LREARRDSSP
LVALLIDLDH FKALNDNHGH LAGDEVLRQF ANVLQGSLRQ SDILCRWGGE EFIVLLREAE
GRQAIEVAEK IRRRTEQLTF SYDNQPLRLT TSIGLSSLQP GDTLHALLTR ADRALYRAKQ
AGRNRVCSET RHE
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