Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1376 |
Symbol | pcaK |
ID | 1043926 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 1567513 |
End bp | 1568859 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637144777 |
Product | benzoate transport |
Protein accession | NP_743535 |
Protein GI | 26988110 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00895] benzoate transport |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.282947 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCAAG CGCAAACCAA CGTCGGCAAA AGCCTCGACG TTCAGTCATT CATCAATCAG CAGCCGCTGT CCCGCTATCA GTGGCGGGTC GTGCTGCTGT GCTTCCTGAT CGTCTTCCTC GACGGCCTGG ACACCGCTGC CATGGGGTTC ATCGCCCCTG CACTGTCGCA AGAGTGGGGG ATCGACCGCG CCAGCCTTGG GCCGGTCATG AGTGCCGCGT TGATCGGCAT GGTGTTCGGT GCCTTGGGCT CCGGGCCGCT GGCTGACCGT TTCGGCCGCA AAGGCGTGCT GGTGGGGGCG GTGCTGGTGT TCGGTGGCTT CAGCCTGGCC TCGGCCTATG CCACCAACGT CGACCAGTTG CTGGTACTGC GCTTCCTGAC TGGCCTGGGC CTGGGTGCAG GCATGCCCAA CGCTACCACG CTGTTGTCCG AATACACCCC GGAGCGCCTC AAGTCGCTGC TGGTGACCAG CATGTTCTGT GGCTTCAACC TGGGCATGGC GGGTGGTGGC TTCATTTCCG CCAAGATGAT CCCGGCCTAC GGCTGGCACA GCCTGCTGGT CATCGGTGGC GTGCTGCCGT TGCTGCTGGC GCTGGTGCTG ATGATCTGGC TGCCGGAGTC GGCGCGGTTC CTGGTGGTGC GCAACCGCGG CACCGACAAG GTGCGCAAGA CCTTGTCGCC AATCGCGCCG CAAGTGGTGG CCGAGGCAGG CAGTTTCAGC GTGCCTGAGC AAAAGGCGGT GGCTGCGCGC AACGTGTTCG CGGTGATCTT CTCTGGCACC TATGGCTTGG GCACCGTGTT GCTGTGGCTG ACCTATTTCA TGGGCCTGGT GATCGTCTAC CTCCTGACCA GCTGGCTGCC AACCCTGATG CGTGACAGCG GCGCGAGCAT GGAGCAGGCG GCGTTCATCG GCGCGCTGTT CCAGTTTGGC GGCGTGCTAA GTGCAGTCGG TGTGGGTTGG GCCATGGACC GTTTCAATCC GCACAAGGTA ATTGGCATTT TCTATCTGCT GGCCGGGGTG TTCGCCTACG CAGTGGGGCA GAGCCTGGGC AACATCACTC TGCTAGCCAC GCTGGTGCTC GTCGCTGGTA TGTGCGTGAA CGGTGCGCAG TCGGCAATGC CATCGCTGGC GGCGCGCTTC TATCCCACCC AGGGCCGGGC CACAGGCGTA TCGTGGATGC TGGGTATTGG CCGCTTTGGT GCGATTCTCG GCGCCTGGAG TGGTGCAACG CTGCTGGGCC TGGGCTGGAG CTTCGAGCAG GTGCTGACGG CGTTGCTGGT ACCGGCGGCG CTGGCGACCG TGGGAGTGGT CGTCAAGGGG CTGGTCAGCC ACGCCGACGC AACCTGA
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Protein sequence | MNQAQTNVGK SLDVQSFINQ QPLSRYQWRV VLLCFLIVFL DGLDTAAMGF IAPALSQEWG IDRASLGPVM SAALIGMVFG ALGSGPLADR FGRKGVLVGA VLVFGGFSLA SAYATNVDQL LVLRFLTGLG LGAGMPNATT LLSEYTPERL KSLLVTSMFC GFNLGMAGGG FISAKMIPAY GWHSLLVIGG VLPLLLALVL MIWLPESARF LVVRNRGTDK VRKTLSPIAP QVVAEAGSFS VPEQKAVAAR NVFAVIFSGT YGLGTVLLWL TYFMGLVIVY LLTSWLPTLM RDSGASMEQA AFIGALFQFG GVLSAVGVGW AMDRFNPHKV IGIFYLLAGV FAYAVGQSLG NITLLATLVL VAGMCVNGAQ SAMPSLAARF YPTQGRATGV SWMLGIGRFG AILGAWSGAT LLGLGWSFEQ VLTALLVPAA LATVGVVVKG LVSHADAT
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