Gene PP_1376 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_1376 
SymbolpcaK 
ID1043926 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp1567513 
End bp1568859 
Gene Length1347 bp 
Protein Length448 aa 
Translation table11 
GC content64% 
IMG OID637144777 
Productbenzoate transport 
Protein accessionNP_743535 
Protein GI26988110 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00895] benzoate transport 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.282947 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCAAG CGCAAACCAA CGTCGGCAAA AGCCTCGACG TTCAGTCATT CATCAATCAG 
CAGCCGCTGT CCCGCTATCA GTGGCGGGTC GTGCTGCTGT GCTTCCTGAT CGTCTTCCTC
GACGGCCTGG ACACCGCTGC CATGGGGTTC ATCGCCCCTG CACTGTCGCA AGAGTGGGGG
ATCGACCGCG CCAGCCTTGG GCCGGTCATG AGTGCCGCGT TGATCGGCAT GGTGTTCGGT
GCCTTGGGCT CCGGGCCGCT GGCTGACCGT TTCGGCCGCA AAGGCGTGCT GGTGGGGGCG
GTGCTGGTGT TCGGTGGCTT CAGCCTGGCC TCGGCCTATG CCACCAACGT CGACCAGTTG
CTGGTACTGC GCTTCCTGAC TGGCCTGGGC CTGGGTGCAG GCATGCCCAA CGCTACCACG
CTGTTGTCCG AATACACCCC GGAGCGCCTC AAGTCGCTGC TGGTGACCAG CATGTTCTGT
GGCTTCAACC TGGGCATGGC GGGTGGTGGC TTCATTTCCG CCAAGATGAT CCCGGCCTAC
GGCTGGCACA GCCTGCTGGT CATCGGTGGC GTGCTGCCGT TGCTGCTGGC GCTGGTGCTG
ATGATCTGGC TGCCGGAGTC GGCGCGGTTC CTGGTGGTGC GCAACCGCGG CACCGACAAG
GTGCGCAAGA CCTTGTCGCC AATCGCGCCG CAAGTGGTGG CCGAGGCAGG CAGTTTCAGC
GTGCCTGAGC AAAAGGCGGT GGCTGCGCGC AACGTGTTCG CGGTGATCTT CTCTGGCACC
TATGGCTTGG GCACCGTGTT GCTGTGGCTG ACCTATTTCA TGGGCCTGGT GATCGTCTAC
CTCCTGACCA GCTGGCTGCC AACCCTGATG CGTGACAGCG GCGCGAGCAT GGAGCAGGCG
GCGTTCATCG GCGCGCTGTT CCAGTTTGGC GGCGTGCTAA GTGCAGTCGG TGTGGGTTGG
GCCATGGACC GTTTCAATCC GCACAAGGTA ATTGGCATTT TCTATCTGCT GGCCGGGGTG
TTCGCCTACG CAGTGGGGCA GAGCCTGGGC AACATCACTC TGCTAGCCAC GCTGGTGCTC
GTCGCTGGTA TGTGCGTGAA CGGTGCGCAG TCGGCAATGC CATCGCTGGC GGCGCGCTTC
TATCCCACCC AGGGCCGGGC CACAGGCGTA TCGTGGATGC TGGGTATTGG CCGCTTTGGT
GCGATTCTCG GCGCCTGGAG TGGTGCAACG CTGCTGGGCC TGGGCTGGAG CTTCGAGCAG
GTGCTGACGG CGTTGCTGGT ACCGGCGGCG CTGGCGACCG TGGGAGTGGT CGTCAAGGGG
CTGGTCAGCC ACGCCGACGC AACCTGA
 
Protein sequence
MNQAQTNVGK SLDVQSFINQ QPLSRYQWRV VLLCFLIVFL DGLDTAAMGF IAPALSQEWG 
IDRASLGPVM SAALIGMVFG ALGSGPLADR FGRKGVLVGA VLVFGGFSLA SAYATNVDQL
LVLRFLTGLG LGAGMPNATT LLSEYTPERL KSLLVTSMFC GFNLGMAGGG FISAKMIPAY
GWHSLLVIGG VLPLLLALVL MIWLPESARF LVVRNRGTDK VRKTLSPIAP QVVAEAGSFS
VPEQKAVAAR NVFAVIFSGT YGLGTVLLWL TYFMGLVIVY LLTSWLPTLM RDSGASMEQA
AFIGALFQFG GVLSAVGVGW AMDRFNPHKV IGIFYLLAGV FAYAVGQSLG NITLLATLVL
VAGMCVNGAQ SAMPSLAARF YPTQGRATGV SWMLGIGRFG AILGAWSGAT LLGLGWSFEQ
VLTALLVPAA LATVGVVVKG LVSHADAT