Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1339 |
Symbol | ddl |
ID | 1044021 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 1525810 |
End bp | 1526766 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637144740 |
Product | D-alanine--D-alanine ligase |
Protein accession | NP_743498 |
Protein GI | 26988073 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.266833 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0340242 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAGCG CCTACGACAA GCTGCACTCG ACCCTGGACG TCAAGGCGTT CGGTCGCGTC GCCGTGCTGT ACGGTGGCAA GAGCGCCGAG CGTGAAGTGT CGCTGAAATC CGGCGCCGCA GTGATCGATG CGCTGAGCAC TGCCGGCGTC GACGTGGTTG CCATCGACGT CGGTGACGAC CTGCTCGCAC GCCTGCAGAG CGAGAAGATT GACCGCGCCT TCATCATCCT CCACGGCCGT GGCGGTGAAG ACGGGAGTAT GCAAGGTTTG CTGGAGTGCC TGGGCATCCC CTACACCGGC AGCGGCATCC TGGCTTCGGC GCTGGCGATG GACAAGCTGC GCACCAAGCA GGTGTGGCAG AGCCTGGGTA TTCCCACGCC ACGCCACGCG GTGCTGGCGA GCGAGAGCGA TTGTTTGCAG GCCAGTACGG AACTGGGCTT CCCGCTTATC GTCAAACCCG CCCATGAAGG CTCTAGTATC GGCATGGCCA AGGTGAACAG CACCCAGGAA CTGGTCGCCG CCTGGCAGGA CGCCGCCAAA TACGATTCCC AGGTACTGGT GGAGCAGTGG ATCCACGGCC CGGAGTTCAC CATCGCGGTA CTGCGCGGCC AGGTGCTGCC GCCGATCGCC CTGGGTACGC CGCACGTGTT CTACGACTAT GACGCCAAGT ACATCGTCAA CGATACCCAG TACCGCATCC CGTGCGGGCT GGATAGCGTC AAGGAACAGG AACTGATCGA CCTGACCGCG CGCGCCTGCG ATGCCATTGG CATCGAAGGC TGGGGGCGGT TGGACGTGAT GCAGGACGAG CAGGGCCGGT TCTGGCTGCT CGAAGTCAAC ACCGCACCAG GCATGACAGA TCATAGCCTG GTGCCCATGG CGGCCCGTGC GGCTGGCCTG GACTTCCAGC AACTGGTGCT GGCAATCCTG GCCGAAAGCG TGGCGACGCG AGGTTAA
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Protein sequence | MTSAYDKLHS TLDVKAFGRV AVLYGGKSAE REVSLKSGAA VIDALSTAGV DVVAIDVGDD LLARLQSEKI DRAFIILHGR GGEDGSMQGL LECLGIPYTG SGILASALAM DKLRTKQVWQ SLGIPTPRHA VLASESDCLQ ASTELGFPLI VKPAHEGSSI GMAKVNSTQE LVAAWQDAAK YDSQVLVEQW IHGPEFTIAV LRGQVLPPIA LGTPHVFYDY DAKYIVNDTQ YRIPCGLDSV KEQELIDLTA RACDAIGIEG WGRLDVMQDE QGRFWLLEVN TAPGMTDHSL VPMAARAAGL DFQQLVLAIL AESVATRG
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