| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1319 |
|---|
| Symbol | petC |
|---|
| ID | 1041644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 1506096 |
|---|
| End bp | 1506875 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637144721 |
|---|
| Product | ubiquinol--cytochrome c reductase, cytochrome c1 |
|---|
| Protein accession | NP_743479 |
|---|
| Protein GI | 26988054 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2857] Cytochrome c1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.708858 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGT TGATTGCAGT ATTTTTGCTG GCAGTGATGC CCGCCTTTTC CTTCGCTGCC
GAACATGGCC TGGAGCTGGA CAAGGTCGAT ATCGACCTGA CTGACAAGGC CGCCATGCAG
GACGGCGCGC GTACCTTCGC CAACTATTGC ATGGGTTGCC ACAGTGCCAA GTTCCAGCGC
TACGAGCGGG TGGCTGACGA CCTGGGTATC CCGCATGAAC TGATGCTCGA GAAGCTGGTG
TTCACAGGTG CCAAGATCGG TGACCACATG CAGATCGGTA TGAAGCCCAG CGACGCCAAG
ACCTGGTTCG GTGCTGCGCC GCCCGACCTG ACACTGGTCG CCCGCGTGCG CGGTACCGAT
TGGCTTTACA CCTACCTGCG CAGTTTCTAT GAGGACCCAT CCCGCCCTTA TGGGGTGAAC
AACAAGGTAT TCCCGAACGT TGGCATGCCT AACGTGCTGG TGGGTCTGCA AGGTAACCAG
GTGGTGGGTT GCAAGCAGGT GCAGACGGTG GTCGATGGCA AGAAGCAATT CGACCCGTTG
ACCGGCAGCC CGTTGACCCA TGAAGCTTGC GATCAGCTGA CCATTACGCC GAATTCCGGT
ACCCTGACGG CCGAGCAGTT CGACGAGAAG GTCAAGAACC TTGTGACCTT CCTGGCCTAT
TCGGCCAACC CAGTCAAACT GGAAAGCCAG CGCATCGGCA CCTATGTGTT GCTGTATCTG
GCTTTCTTCT TCGTATTCGC CTACTTGCTC AAGCGTGAAT ACTGGAAGGA CGTGCACTGA
|
|---|
| Protein sequence | MKKLIAVFLL AVMPAFSFAA EHGLELDKVD IDLTDKAAMQ DGARTFANYC MGCHSAKFQR
YERVADDLGI PHELMLEKLV FTGAKIGDHM QIGMKPSDAK TWFGAAPPDL TLVARVRGTD
WLYTYLRSFY EDPSRPYGVN NKVFPNVGMP NVLVGLQGNQ VVGCKQVQTV VDGKKQFDPL
TGSPLTHEAC DQLTITPNSG TLTAEQFDEK VKNLVTFLAY SANPVKLESQ RIGTYVLLYL
AFFFVFAYLL KREYWKDVH
|
|---|
| |