| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1298 |
|---|
| Symbol | aapQ |
|---|
| ID | 1041680 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 1483921 |
|---|
| End bp | 1485099 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637144700 |
|---|
| Product | polar amino acid ABC transporter inner membrane subunit |
|---|
| Protein accession | NP_743458 |
|---|
| Protein GI | 26988033 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4597] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAATC AAATCGGCGC ACCCAAGGGC TTGTCCCTTA ACGATCCGCG TGTGCGCGCG
TGGCTGTTCC AGATCCTCAC GATCGTCTTC GTGGTCGGCC TGGGCTGGTA CCTGTTCCAC
AACACGCAAA CCAACCTGCA ACACCGGGGC ATCACCTCGG GCTTCGACTT CCTCGACCGC
AGTGCCGGCT TCGGTATCGC CCAGCACCTG ATCCCCTATG TGGAATCCGA CAGTTATGCG
CGGGTGTTCG TCATCGGCCT GCTCAATACG CTGTTGGTGA CCTTCATCGG CGTCATTCTG
GCGACGATAC TGGGCTTCAT CATCGGTGTG GCTCGCCTGT CACCGAACTG GATGATCAAC
AAGCTGGCGA CCGTCTATGT GGAAACCTTC CGCAACATTC CGCCGTTGTT GCAGATCCTG
TTCTGGTATT TCGCCGTGTT CCTGACCCTG CCGGGACCGC GGGGCAGCAT CAACATCGAG
GACATGTTCT TCATCAGCAA CCGTGGCTTG AACATGCCTG GCGCGTCCAT AGCCGATGGC
TTCTGGCCAT TTGTGGTGGC TTTGGCGCTG GCCATTGCTG CTATTGCCCT GATGGTGCGC
TACGCCAACA AGCGTTTCAA CGAGACGGGC GTGCCGTTCC ACAAGTTCTG GGCGGGGCTG
CTGCTGTTCA TCGCCATTCC GAGCCTGAGC GTGCTGTTGT TCGGCAGCCC GGTAACTTGG
GACATGCCGC AGCTCAAGGG CTTCAACTTC GTCGGGGGCT GGGTGCTGAT CCCCGAGCTG
CTGGCGCTGA CCCTGGCGCT GACTATCTAT ACGGCAGCCT TCATCGCCGA AATCGTGCGT
TCCGGCATCC GTTCGGTCAG TCATGGCCAG ACCGAAGCCG CGCGCTCGTT GGGCCTGCGC
GAGGGCCCGA CCCTGCGCAA GGTGATCATC CCCCAGGCAC TGCGGGTGAT CATTCCGCCG
CTGACCAGCC AGTACCTGAA CCTGGCGAAG AACTCTTCGC TGGCGGCCGG TATCGGCTAC
CCGGAGATGG TCTCGCTGTT CGCCGGTACC GTGCTCAACC AGACCGGCCA GGCCATCGAG
GTGATCGCCA TCACCATGAG TGTCTATCTC GCCATCAGCA TCAGCATTTC GCTGCTGATG
AACTGGTACA ACAAGCGCAT TGCGCTGATC GAGCGGTGA
|
|---|
| Protein sequence | MQNQIGAPKG LSLNDPRVRA WLFQILTIVF VVGLGWYLFH NTQTNLQHRG ITSGFDFLDR
SAGFGIAQHL IPYVESDSYA RVFVIGLLNT LLVTFIGVIL ATILGFIIGV ARLSPNWMIN
KLATVYVETF RNIPPLLQIL FWYFAVFLTL PGPRGSINIE DMFFISNRGL NMPGASIADG
FWPFVVALAL AIAAIALMVR YANKRFNETG VPFHKFWAGL LLFIAIPSLS VLLFGSPVTW
DMPQLKGFNF VGGWVLIPEL LALTLALTIY TAAFIAEIVR SGIRSVSHGQ TEAARSLGLR
EGPTLRKVII PQALRVIIPP LTSQYLNLAK NSSLAAGIGY PEMVSLFAGT VLNQTGQAIE
VIAITMSVYL AISISISLLM NWYNKRIALI ER
|
|---|
| |