| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1222 |
|---|
| Symbol | tolB |
|---|
| ID | 1046064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 1398166 |
|---|
| End bp | 1399467 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637144622 |
|---|
| Product | translocation protein TolB |
|---|
| Protein accession | NP_743382 |
|---|
| Protein GI | 26987957 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATTAAAC GTCTGAGAGG ACTGCTGGTC ATGCTCTGCT GCGTGGCAGG CATGGCGGTG
GCAGAAGAAA AGAACATCCT GGTTACCAGC GGCAGCGACC GGGCCACGCC CATCGCGGTA
GTGCCGTTCG GTCTGCAGGG CGGTAGCGTG TTGCCTGAAG ACATCGCCGA CATCATCGGC
AACGACCTGC GCAACTCTGG CTATTACTCG CCAATTCCGC GGCAGAACAT GATCAGCCAG
CCGTCGCAGG CCAGCGAAGT GATCTTCCGT GATTGGAAAG CGCTGGGTGC ACAGTACGTG
ATGGTCGGCA GCATCGTGCC GTCGGGCGGT CGCCTGCAGG TGCAGTACGC GCTGTTCAAC
GTCGCCACCG AGCAGCAAGT GCTGACCGGC AGCGTGGCGG GCAGCACCGA CCAGTTGCGC
GACATGGCGC ACTACATTGC CGACCAGTCG TTCGAGAAGC TCACCGGCAT CAAGGGCGCG
TTCTCTACGC GCATGCTGTA CGTGACGGCC GAGCGTTTCT CCACCAATAA CACCCGCTAC
ACCCTCCAGC GTTCGGACTA CGACGGTGCG CGTGCGGTGA CCCTGCTGCA ATCGCGTGAG
CCGATCCTGT CGCCGCGCTT TGCGCCAGAT GGCAAACGTA TCGCCTACGT TTCGTTCGAG
CAGAAGCGCC CACGTATCTT CGTGCAGAAC ATCGATACTG GCCGCCGCGA GCAGGTGACC
AACTTCGAAG GCCTGAACGG TGCGCCAGCC TGGTCGCCGG ACGGTTCGCG CCTGGCGTTC
GTACTGTCCA AGGACGGCAA CCCGGACATC TACGTGATGA ACGTGGCCTC GCGCCAGATC
AGCCGTGTTA CTGCAGGCCC GGGTATCAAT ACCGAGCCGT TCTGGGGTAA AGATGGCAAC
ACCCTCTACT TCACTTCCGA CCGTGGCGGC AAACCGCAGA TCTATAAACA GTCGGTCAGT
GGTGGTGGTG CCGAGCGCGT AACGTTCGTA GGTAACTACA ACGCCAACCC GAAACTTTCG
GCGGACGAAA AGACCCTGGT AATGATTCAT CGCCAACAGG GCTTTACCAA CTTCAAAGTG
GCGGCACAGG ACTTGCAACG CGGAAGTGTA AAGATTCTGT CTGAAACAAG TCTTGATGAG
TCTCCCACTG TTGCGCCAAA CGGCACCATG CTAATCTACG CCACCCGCCA GCAGGGCCGG
GGAGTCTTGA TGCTCGTGTC GCTGAACGGC CGCGTGAGGC TCCCACTTCC TACCGCTCAA
GGCGAAGTCA GAGAACCGTC CTGGTCCCCT TACCTGAACT GA
|
|---|
| Protein sequence | MIKRLRGLLV MLCCVAGMAV AEEKNILVTS GSDRATPIAV VPFGLQGGSV LPEDIADIIG
NDLRNSGYYS PIPRQNMISQ PSQASEVIFR DWKALGAQYV MVGSIVPSGG RLQVQYALFN
VATEQQVLTG SVAGSTDQLR DMAHYIADQS FEKLTGIKGA FSTRMLYVTA ERFSTNNTRY
TLQRSDYDGA RAVTLLQSRE PILSPRFAPD GKRIAYVSFE QKRPRIFVQN IDTGRREQVT
NFEGLNGAPA WSPDGSRLAF VLSKDGNPDI YVMNVASRQI SRVTAGPGIN TEPFWGKDGN
TLYFTSDRGG KPQIYKQSVS GGGAERVTFV GNYNANPKLS ADEKTLVMIH RQQGFTNFKV
AAQDLQRGSV KILSETSLDE SPTVAPNGTM LIYATRQQGR GVLMLVSLNG RVRLPLPTAQ
GEVREPSWSP YLN
|
|---|
| |