Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1171 |
Symbol | |
ID | 1045739 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 1346084 |
End bp | 1346890 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637144568 |
Product | NAD-dependent epimerase/dehydratase |
Protein accession | NP_743331 |
Protein GI | 26987906 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.132955 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0662114 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCACTA CCCCCTTCAA TCGCCTGCTG CTCACCGGAG CCGCAGGCGG CCTGGGCAAG GTCCTTCGCG AACGCCTGAA AGGCTACGCC GAGGTCCTGC GCCTGTCTGA CATCAGCCCC ATGGCCCCGG CCGCGGGCCC GCATGAAGAA GTCATTACCT GTGACCTGGC CGACAAGGCT GCGGTGCATA CCCTGGTCGA GGGCGTAGAC GCCATCATCC ACTTTGGCGG GGTTTCTACC GAACACGCCT TCGAAGAGAT TCTCGGCCCC AATATCTGCG GCGTGTTCCA CGTGTACGAG GCGGCGCGCA AGCACGGGGT CAAGCGCATC ATCTTCGCCA GCTCCAACCA CACCATCGGT TTCTATCGCC AGGATGAGCG CATCGACGCT CACGCGCCGC GCCGGCCCGA CAGCTATTAC GGGCTGTCCA AGTGCTACGG CGAAGATGTG GCCAGCTTCT ACTTTGACCG CTACGGCATC GAGACCGTCA GCATTCGCAT CGGCTCGTCG TTCCCGCAGC CACAGAACCT GCGCATGCTC TGCACCTGGC TCAGTTACGA CGACCTGGTG CAGTTGATCG AACGCGGGCT GTTCACCCCC GGGGTTGGCC ACACCATCGT CTACGGCGCC TCCGACAATC GCACCGTGTG GTGGGACAAC CGCCATGCCG CGCACCTGGG CTATGTACCC AAGGACAGCT CCGAAACCTT CCGCGCAGCC GTGGAGGCCC AACCGGCACC CGCCGCCGAT GACCCGAGCA TGGTCTACCA GGGCGGCGCT TTCGCCGTGG CCGGCCCGTT CAACTGA
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Protein sequence | MTTTPFNRLL LTGAAGGLGK VLRERLKGYA EVLRLSDISP MAPAAGPHEE VITCDLADKA AVHTLVEGVD AIIHFGGVST EHAFEEILGP NICGVFHVYE AARKHGVKRI IFASSNHTIG FYRQDERIDA HAPRRPDSYY GLSKCYGEDV ASFYFDRYGI ETVSIRIGSS FPQPQNLRML CTWLSYDDLV QLIERGLFTP GVGHTIVYGA SDNRTVWWDN RHAAHLGYVP KDSSETFRAA VEAQPAPAAD DPSMVYQGGA FAVAGPFN
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