Gene PP_1167 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_1167 
Symbol 
ID1045720 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp1342269 
End bp1343549 
Gene Length1281 bp 
Protein Length426 aa 
Translation table11 
GC content62% 
IMG OID637144564 
ProductTRAP dicarboxylate transporter, DctM subunit 
Protein accessionNP_743327 
Protein GI26987902 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1593] TRAP-type C4-dicarboxylate transport system, large permease component 
TIGRFAM ID[TIGR00786] TRAP transporter, DctM subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0119515 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGCGT TCATTCTGTT GGGCAGTTTC ATCGTGCTGA TTCTGATCGG CATGCCGGTA 
GCCTACGCCC TGGGCCTGTC GGCACTGATC GGCGCCTGGT GGATCGACAT CCCGCTGCAG
GCGATGATGA TCCAGGTGGC CAGTGGTGTT AACAAGTTCT CCCTGCTGGC CATTCCATTC
TTCGTGCTGG CCGGCGCGAT CATGGCCGAA GGCGGCATGT CGCGGCGGCT GGTGGCCTTT
GCCGGGGTGC TGGTGGGCTT CGTGCGTGGC GGGCTGTCGC TGGTCAACAT CATGGCCTCG
ACCTTCTTCG GTGCGATTTC CGGCTCGTCG GTAGCCGATA CCGCCTCGGT GGGCTCGGTG
CTGATCCCGG AGATGGAGCG CAAAGGCTAC CCGCGTGAAT TTTCCACCGC CGTGACCGTC
AGTGGCTCGG TGCAGGCGCT GCTGACCCCG CCCAGCCACA ACTCGGTGCT GTACTCGCTG
GCGGCGGGCG GCACGGTATC CATTGCCTCG CTGTTCATGG CGGGTATCAT GCCCGGGTTG
CTTCTGAGCG CAGTGATGAT GGGCCTGTGC CTGATCTTCG CGAAGAAGCG CAACTACCCC
AAAGGTGAAG TCATCCCGCT GCGCGAGGCG CTGAAAATTG CCGGTGAGGC GCTGTGGGGC
CTGATGGCCA TGGTCATCAT TCTCGGCGGT ATCCTGTCGG GGGTGTTCAC CGCGACCGAA
TCGGCAGCCG TGGCGGTGGT GTGGTCATTC TTCGTGACCA TGTTCATCTA CCGCGACTAC
AAGTGGCGCG ACCTGCCCAA GCTGATGCAC CGCACAGTAC GGACCATCTC CATCGTGATG
ATCCTGATCG GCTTTGCCGC CAGCTTCGGC TACGTGATGA CGCTGATGCA GATCCCGTCG
AAGATCACCA CCGCGTTCCT GACCCTGTCG GACAACCGCT ACGTGATCCT GATGTGCATC
AACTTCATGC TGATGCTGCT GGGCACGGTG ATGGACATGG CGCCGCTGAT CCTGATTCTT
ACCCCGATCC TGCTGCCGGT GATTACCGGT ATCGGCGTGG ACCCGGTGCA CTTCGGCATG
ATCATGCTGG TGAACCTGGG GATCGGGCTG ATAACGCCAC CGGTGGGCGC CGTGCTGTTC
GTGGGCTCGG CCATTGGCAA GGTGAGTATC GAGTCGACGG TGAAGGCGCT GATGCCGTTC
TACCTGGCGC TGTTCCTGGT GCTGATGGCA GTGACTTACA TTCCAGCGAT CTCGCTGTGG
CTGCCTAGCG TGGTGCTGTA A
 
Protein sequence
MEAFILLGSF IVLILIGMPV AYALGLSALI GAWWIDIPLQ AMMIQVASGV NKFSLLAIPF 
FVLAGAIMAE GGMSRRLVAF AGVLVGFVRG GLSLVNIMAS TFFGAISGSS VADTASVGSV
LIPEMERKGY PREFSTAVTV SGSVQALLTP PSHNSVLYSL AAGGTVSIAS LFMAGIMPGL
LLSAVMMGLC LIFAKKRNYP KGEVIPLREA LKIAGEALWG LMAMVIILGG ILSGVFTATE
SAAVAVVWSF FVTMFIYRDY KWRDLPKLMH RTVRTISIVM ILIGFAASFG YVMTLMQIPS
KITTAFLTLS DNRYVILMCI NFMLMLLGTV MDMAPLILIL TPILLPVITG IGVDPVHFGM
IMLVNLGIGL ITPPVGAVLF VGSAIGKVSI ESTVKALMPF YLALFLVLMA VTYIPAISLW
LPSVVL