Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1167 |
Symbol | |
ID | 1045720 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 1342269 |
End bp | 1343549 |
Gene Length | 1281 bp |
Protein Length | 426 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637144564 |
Product | TRAP dicarboxylate transporter, DctM subunit |
Protein accession | NP_743327 |
Protein GI | 26987902 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0119515 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGCGT TCATTCTGTT GGGCAGTTTC ATCGTGCTGA TTCTGATCGG CATGCCGGTA GCCTACGCCC TGGGCCTGTC GGCACTGATC GGCGCCTGGT GGATCGACAT CCCGCTGCAG GCGATGATGA TCCAGGTGGC CAGTGGTGTT AACAAGTTCT CCCTGCTGGC CATTCCATTC TTCGTGCTGG CCGGCGCGAT CATGGCCGAA GGCGGCATGT CGCGGCGGCT GGTGGCCTTT GCCGGGGTGC TGGTGGGCTT CGTGCGTGGC GGGCTGTCGC TGGTCAACAT CATGGCCTCG ACCTTCTTCG GTGCGATTTC CGGCTCGTCG GTAGCCGATA CCGCCTCGGT GGGCTCGGTG CTGATCCCGG AGATGGAGCG CAAAGGCTAC CCGCGTGAAT TTTCCACCGC CGTGACCGTC AGTGGCTCGG TGCAGGCGCT GCTGACCCCG CCCAGCCACA ACTCGGTGCT GTACTCGCTG GCGGCGGGCG GCACGGTATC CATTGCCTCG CTGTTCATGG CGGGTATCAT GCCCGGGTTG CTTCTGAGCG CAGTGATGAT GGGCCTGTGC CTGATCTTCG CGAAGAAGCG CAACTACCCC AAAGGTGAAG TCATCCCGCT GCGCGAGGCG CTGAAAATTG CCGGTGAGGC GCTGTGGGGC CTGATGGCCA TGGTCATCAT TCTCGGCGGT ATCCTGTCGG GGGTGTTCAC CGCGACCGAA TCGGCAGCCG TGGCGGTGGT GTGGTCATTC TTCGTGACCA TGTTCATCTA CCGCGACTAC AAGTGGCGCG ACCTGCCCAA GCTGATGCAC CGCACAGTAC GGACCATCTC CATCGTGATG ATCCTGATCG GCTTTGCCGC CAGCTTCGGC TACGTGATGA CGCTGATGCA GATCCCGTCG AAGATCACCA CCGCGTTCCT GACCCTGTCG GACAACCGCT ACGTGATCCT GATGTGCATC AACTTCATGC TGATGCTGCT GGGCACGGTG ATGGACATGG CGCCGCTGAT CCTGATTCTT ACCCCGATCC TGCTGCCGGT GATTACCGGT ATCGGCGTGG ACCCGGTGCA CTTCGGCATG ATCATGCTGG TGAACCTGGG GATCGGGCTG ATAACGCCAC CGGTGGGCGC CGTGCTGTTC GTGGGCTCGG CCATTGGCAA GGTGAGTATC GAGTCGACGG TGAAGGCGCT GATGCCGTTC TACCTGGCGC TGTTCCTGGT GCTGATGGCA GTGACTTACA TTCCAGCGAT CTCGCTGTGG CTGCCTAGCG TGGTGCTGTA A
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Protein sequence | MEAFILLGSF IVLILIGMPV AYALGLSALI GAWWIDIPLQ AMMIQVASGV NKFSLLAIPF FVLAGAIMAE GGMSRRLVAF AGVLVGFVRG GLSLVNIMAS TFFGAISGSS VADTASVGSV LIPEMERKGY PREFSTAVTV SGSVQALLTP PSHNSVLYSL AAGGTVSIAS LFMAGIMPGL LLSAVMMGLC LIFAKKRNYP KGEVIPLREA LKIAGEALWG LMAMVIILGG ILSGVFTATE SAAVAVVWSF FVTMFIYRDY KWRDLPKLMH RTVRTISIVM ILIGFAASFG YVMTLMQIPS KITTAFLTLS DNRYVILMCI NFMLMLLGTV MDMAPLILIL TPILLPVITG IGVDPVHFGM IMLVNLGIGL ITPPVGAVLF VGSAIGKVSI ESTVKALMPF YLALFLVLMA VTYIPAISLW LPSVVL
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