Gene PP_1155 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_1155 
Symbol 
ID1045469 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp1322780 
End bp1323853 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content64% 
IMG OID637144550 
Productdiguanylate cyclase 
Protein accessionNP_743316 
Protein GI26987891 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.149088 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.131446 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATAACC GCAACGGCAA AGGACTTTCA TTCGTCAAGC GCATCTACCT GCCGCGGGTC 
ATTGGCCTGG GAATCGGCCT GTTCACTGTC ATGGCGGCCA TTGCGCCGCT GTCACCCCCC
TCCTGGGCAT GGCTGCTGGT ACTGTTCAAT GGTTTGCTGT GGCCGCACGT GGCCTACCTG
TGGGCTGCCC GCTCGACAAC GCCTTACCAG GCGGAACAGC GCAACCTCCT GCTGGACTCC
CTGATGGGCG GGTTCTGGAC CGCCGCCATG CACTTCAACC CGTTGCCCAG CGTGACCGTG
CTGGCGATGA TGACGATGAA CAACGTCGCC GCCGGCGGCA AGCGCATGGT CTTTCGCGGG
GTGCTGGCGC AACTGGCTGG CATACTCGCC GCCATCCTGC TGCTCGGCCC TGGCTTGCAA
TTGACCGCCA CGCCCCTGCA GGTCTATGCG TGCCTGCCAA TGCTGGGGCT GTACCCGCTG
GCCTTGGGCT GGGTGTGCTA CCAGCTTGCG ATCAAGCTGG GCGACCACAA GCGCCGGCTG
AGCGCCCTGA GCCTGACCGA CAGCCTGACC GGGCTGTTCA ACCACGGTGC CTGGAAGGAC
CTGCTGCAGC TCAAGTTCCA GGCGTGCAAG CAACAACAGG GGCACGCGGT GATTGCCCTG
ATCGACATCG ATCACTTCAA GACCATCAAC GACACCTTTG GCCATGTGGT CGGCGACTGT
GTACTGCGCC AGCTCAGTGC TGAGCTGCGG CGCAGTTTGC GCGAGGGCGA CCAGGCCGGG
CGTTACGGCG GCGACGAGTT CTGCGTGATC CTGCCCGAAA CCAGCGAAGC CCAGGCCTGC
CAAGCCATGG AGCGTCTACG CGAGCGGGTT TCCAGCTACC GCAACCCACA GTTACCGCAC
CTGCGCATCA GCCTGAGTAT CGGCCTGTCG CCCTTCCAGG CCAGCCTCGA GTCCCCCGAG
CACTGGCTCG AACAGGCAGA CAAGGCGCTG TACATCGCCA AGCACGCTGG CCGCGATCAG
GTCAATTTTG CCCGCGGTGA AGCTGCCACG CTCAGGCTGG CCTATCCTGA TTGA
 
Protein sequence
MDNRNGKGLS FVKRIYLPRV IGLGIGLFTV MAAIAPLSPP SWAWLLVLFN GLLWPHVAYL 
WAARSTTPYQ AEQRNLLLDS LMGGFWTAAM HFNPLPSVTV LAMMTMNNVA AGGKRMVFRG
VLAQLAGILA AILLLGPGLQ LTATPLQVYA CLPMLGLYPL ALGWVCYQLA IKLGDHKRRL
SALSLTDSLT GLFNHGAWKD LLQLKFQACK QQQGHAVIAL IDIDHFKTIN DTFGHVVGDC
VLRQLSAELR RSLREGDQAG RYGGDEFCVI LPETSEAQAC QAMERLRERV SSYRNPQLPH
LRISLSIGLS PFQASLESPE HWLEQADKAL YIAKHAGRDQ VNFARGEAAT LRLAYPD