| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1154 |
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| Symbol | |
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| ID | 1045664 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 1320143 |
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| End bp | 1322728 |
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| Gene Length | 2586 bp |
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| Protein Length | 861 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637144549 |
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| Product | sensory box protein |
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| Protein accession | NP_743315 |
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| Protein GI | 26987890 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.369215 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.176732 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGGA CCGCCAAGCT TTCACCCGCT AGCCCCACAC CGCGCTTTCA GGTACGCCAC
CTCATTGCCG GTTTCAGCGC AGTGTTCGGC CTGGCTTGCC TGGTCATTCT CGGCGCTCTG
TTCAATATCG CCCGCACGCT CGACCAACAG GAGCGCGAGC GTAGCGCCTT CCATGCGACC
CAGGCGCTGG AACAACGGCT GCTCGCCTCA CGCCAGTTTC TGTCCAGCTA TGCCGTATGG
GATGCAGCCT TCGAGCACCT GTCGGGCCAA GCCGACTGGC AATGGGCCTA CGAGGAAAAG
AACGTAGGCG AGTCGCTGTA CAGCGCCAGC GGCTACGAAG GGGTGTTCGT AGTGGAAAAC
CGCCGCACCA CCTATGCCTT GTTCAAAGGC CAGCCCAGCC AGGCAGGCGC TGACAGCTAT
ATAGACACAC CCCTGCAGCC GATTATCGAA CAGGCCCGCG CGGCGGCGAT TTCACGCGAG
CAGGTCACCC GTTTCGTGCT GTTCAATGGC TGGCCGGCCG CACTCAGTGC AGCAGCCGTG
CGCCCGGACC GGGAGGTTAC CGACAGCGAG GTGAGTCAGG CGCCGGTCAT GCTATTCATT
GACCAGCTCA CCGAAAGCAA ACTGGCGCAG TTGGGCAAAG GCGCCGGCCT GACCGGCATG
CACGTGGAAA AGGAGGATAG GCAGGATCAC AACCACCTGC GCATCGACCT GGGCGACACC
GGCTACCATC TGACCTGGAA CAGCCCGCTG CCGGGGCAGC AGATGCTGTG GGCAGTGTTG
CCAGCACTGT TGTGCGCACT ACTGATACTT GGGCTGGTGA TGCTGTACCT GTTCCGCCAT
GCCTTGCGCA GCTCCCGGGC AATCGGCCTC ACGCTCGTGC ATCTGCAACA AAGCAACCAG
GCCCTGGAGG CCAGCGAGCA GCGTTTCCGG GCGGTGGCCG AGTCGGCATC CGACTGGATC
TGGGAAACCG ACCGGCAACA ACGCCTGACC TACCTGTCGC AACGCTTCGC CAACGTCACC
GGCTACCCGG TAGACGGCTG GCTGGGCCAC CCGCTCAACC AGTTGCTGGC CTGCGATACC
ACGCCGCTGT CACCTTGGCT GGACGCCCTG ACTGCAGCCG AGCCGCAGCA ATTGGCCAAC
CTGCGCTGTA CTTACCGCGA CCAGAATGGC CAGAACCGCT ACTGCCGGAT ATCCGCCCGC
GCTATCTGGC GCGATGGCAA GGCCATCGGT TTCCGGGGTA CCGCCAGCGA TATCACCGAC
GAAGTCGACG CCCACGCGCG CATTCAGCAC CTTTCGCTGC ACGACCCACT GACCGGACTG
GCCAACCGCA ACAAGCTCGC CCGGCACCTG GAGCAGGCCT TGTTGCGCGG CAGTGACTCG
CCGCCGCTGA CCTTGTTGCT GCTGGACCTG GACAACTTCA AGCCGATCAA CGACTCGCTC
GGTCATGCCG CCGGAGATGC CGTGCTGCAA GAAGTGGCAA CGCGCCTGCG CGACACCACC
CGCGATGGCG ACCTGGTCGC GCGTCTGGGC GGCGACGAGT TCATCCTGGT ACTCAGCGGC
ATGGACAACA GCAGCGAGAT CGACCGCTTC TGTGCGCGCC TGATCGGCCT GCTGCAGCAA
CCCATCGTCT TCGAAAACCA GCCGCTGCAC ATTGGTGCCA GCATTGGCGT TGCACAGACG
CGCAACCAGG GCTTCGATGC AGGTGAGCTG ATCCGCTGCG CCGACATCGC CCTGTACCAG
GCCAAGGCCG ATGGAAAGAA CACATGGCGC TACTTCGTTG CCGAAATGAA CCAGCAGATC
CAGTACCGCC GCCAGCTGGA GAACGACCTG CGCAGGGCCC TGCGCAATGA GGAGTTCGAG
TTGCATTACC AGCCACGCTA CCGCCTGGAC GACCTGCGAA TCGTCGCGGT CGAGGCCTTG
GTGCGCTGGC GGCATCCACA GGAAGGGTTG CTGGCGCCGG ACACCTTCAT CCCGTTGGCC
GAGCAGAGCG ACATCATTGT TGCGCTGGGC CGCTGGGTGC TTCGCGAAGC TTGCCGCACT
GCCCATGACT GGCCGGCCGA CGTGCTGGTT TCAGTCAACC TGTCGCCTGC CCAGTTCTTG
CGCAGCGATG TGGTAGCGGA CGTGCGCGAA ACTTTGCTCG ACACGGCCTT CCCCGCCCAA
CGCCTGGAAC TGGAAATTAC CGAGAACGTG ATGCTCAACG ATATCGAAGG CGCATTAGGC
ACCATGCTGT CGCTCAAGGA GCTAGGGGTG CGCCTGAACA TGGATGATTT CGGCACCGGC
TATTCGTCGT TGGGCTACCT GCGTACCTAC CCGTTCGACA GCATCAAGAT CGACAAGCGC
TTCATCAGCG GCCTGAACAA CAACGGCGGC AGCGACCGCG CTGTGGTCCA GGCCATCATC
AACCTGGGCG AGGCGATGGG GCTGACAGTG ACAGCCGAAG GCGTGGAAAG CGAACATCAA
CTCAAGTCGC TGGAAAAGGA CCGCTGCCAT GAAGTGCAAG GCTATTACCT GAGCAAGCCC
CTGGACAGCG CCGGGTTGAC GGCGTTGTTG CACCAACCCT CCCAAAACAC TGCACAGCCT
TTGTAG
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| Protein sequence | MARTAKLSPA SPTPRFQVRH LIAGFSAVFG LACLVILGAL FNIARTLDQQ ERERSAFHAT
QALEQRLLAS RQFLSSYAVW DAAFEHLSGQ ADWQWAYEEK NVGESLYSAS GYEGVFVVEN
RRTTYALFKG QPSQAGADSY IDTPLQPIIE QARAAAISRE QVTRFVLFNG WPAALSAAAV
RPDREVTDSE VSQAPVMLFI DQLTESKLAQ LGKGAGLTGM HVEKEDRQDH NHLRIDLGDT
GYHLTWNSPL PGQQMLWAVL PALLCALLIL GLVMLYLFRH ALRSSRAIGL TLVHLQQSNQ
ALEASEQRFR AVAESASDWI WETDRQQRLT YLSQRFANVT GYPVDGWLGH PLNQLLACDT
TPLSPWLDAL TAAEPQQLAN LRCTYRDQNG QNRYCRISAR AIWRDGKAIG FRGTASDITD
EVDAHARIQH LSLHDPLTGL ANRNKLARHL EQALLRGSDS PPLTLLLLDL DNFKPINDSL
GHAAGDAVLQ EVATRLRDTT RDGDLVARLG GDEFILVLSG MDNSSEIDRF CARLIGLLQQ
PIVFENQPLH IGASIGVAQT RNQGFDAGEL IRCADIALYQ AKADGKNTWR YFVAEMNQQI
QYRRQLENDL RRALRNEEFE LHYQPRYRLD DLRIVAVEAL VRWRHPQEGL LAPDTFIPLA
EQSDIIVALG RWVLREACRT AHDWPADVLV SVNLSPAQFL RSDVVADVRE TLLDTAFPAQ
RLELEITENV MLNDIEGALG TMLSLKELGV RLNMDDFGTG YSSLGYLRTY PFDSIKIDKR
FISGLNNNGG SDRAVVQAII NLGEAMGLTV TAEGVESEHQ LKSLEKDRCH EVQGYYLSKP
LDSAGLTALL HQPSQNTAQP L
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