Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1144 |
Symbol | |
ID | 1045464 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 1309266 |
End bp | 1311530 |
Gene Length | 2265 bp |
Protein Length | 754 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637144539 |
Product | GGDEF domain-containing protein |
Protein accession | NP_743305 |
Protein GI | 26987880 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3300] MHYT domain (predicted integral membrane sensor domain) [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.252885 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATGGC TGGGGCTGCA ACTGTTCACC GATCTTCCCG CAACCGGGCG CATCGTCATC GACTGCCGTC ATGAACCGCT CTTGGTTCTG CTCGCCTATT TCGTTGCTTG CGCGGCCTGT TTCGCCACGC TCGACATGGC CGAGCGTCAG TCCCACAGCG ACGACCCCAC CGCCCACCGA CAATGGAACA TGCTTGGAGC CTGCTGCCTG GCAGGCGGCA TATGGGCCAT GCATTTCATC AGCATGCTGG CCTTTCGGGC CCCGGTGGAC GTGCACTACG ACGTATCCCT GACCATTCTT TCACTGCTCA TCGCACTGGG CGTGGCCTGG TTGGCCATGC ACAGCCTCGA ACGCAGCAAC ATGCGCGCGC ACTATTTCGT GCCGAGCGCA GGGCTGATCG GCCTGGGCAT CATCCTCATG CATTTTGTCG GCATGGCCGC GATGGAAACG GGTGCCCGCC AGTACTACCA AACCGGCTTG CTACTTGCCT CTGCCGCCAT TGCCCTGCTC ACCGCCCTGA CCGCGCTGTA CCTGGCCCGC TACTTGCGCA ATGGCAGCGG TACCCTGTAC CAGGCCATGA AGTACGGCGC CAGCCTGCTG ATGGCCGGCG GCATCGTCGC CACTCATTTC ACCGCGATGT CGGCCATGAC CTTGGTCATC CCTGCCGATA CCGCACTGCG CCTGCCGTCG GGCGACAACA GCCTGCAACT GGGACTGGGC ATCGGCTTCA TCACCCTGCT GATCAGTGGC GCCAGCATCA GCGCCGCACT GGCCGACAAG AAGCTGCAAA GCAAGGAGCA CGACCTGCGC CGGGTCAGCG TACTGCTCAG CCAACTGGAC CAGGCCCGCG CTTCGCTGCA GCAGGCGGCG CACTATGATG CCCTGACCAA CCTGCTCAAC CGCCGTGGAT TCAACCAGGT ATTCGCCGAG CGCCTGGTCG AACATCAGGC CAGCGAAAAC CGCCTGGCTG TCATGTTCCT CGACATCGAC CATTTCAAGC GTATCAACGA CAGCCTTGGC CACGACGCCG GTGACGAGCT GCTCAAGGTG ATCGCCAACC ACATCAAGGC CGCTACCCGC AACCACGACC TGGTTGCGCG CTTTGGTGGC GACGAGTTCT GTGTGGTCAC CAGCCTGAAC AGCCGCGACG AAGCCCGCCA CCTGGCCCAG CGCATCATGC AACGGATGAA AGACCCCATC GACCTGGGCG GGCGGCGCAT GGTCATGACC ACCAGCATCG GTATAAGTAT CTTCCCGGAC GATGGCAGCA CAGCCGAAGA GCTGCTCAAG CATGCCGACC TGGCCCTCTA CCAATCCAAG GACAACGGGC GCAACAGCCT GAATTTCTTC AATGACAGCC TGAAGGCTCG CGCGTCGATC GCCTTGCAAC TGGAAGAAGA GCTGCGCCTG GCGCTGCTCG AAGAGCGCGG GCTGTGTGTG CACTACCAGC CGATCTTCGA CCTGCGCAGC GGGCAAGTGG CCAAACTGGA AGCGCTGGTA CGCTGGCAGC ATCCTCAACA CGGCCTGCTC GGGCCCGACC GTTTTGTCGG CATTGCCGAA GCCAACGGCC TGATCATCGA CCTTGACCTG TGGGTGCTGC GCCATGCCTG TGCCGACCTG GCCCACTTGC AGCGCCACGG CTACGGCGAG GTCCAGGTCA CGGTCAATTG CTCGGCAGTC ACCCTCAGCC ACGACGAACT GCCTAACGAA GTAGAAAAGG CGCTGTTCCA CGCCGGCCTT GCGCCGCGCC ACCTGGAGCT GGAGGTGACC GAGAACGCCC TGGTAGGGGA TATCCAGCGC ACGGTCAGCC TGCTCAAACG CGTCAGGGCT CTGGGGGTGG CACTTTCGAT CGATGATTTT GGTACCGGCT ACTCGTCACT GGCTTACCTC AAGCGCCTGC CGCTGGATGT GCTGAAGATC GACCGCACCT TCCTGCAGGA TGTACCGGGC AGCCAGAAAG ACCGGGAAAT TGTCCAGGCG ATCATCGCCA TGGCGCATAC CCTGCACCTG CGGGTAGTCA GCGAGGGCGT GGAAACCGCC GAACAGCAGG CGTTCCTCGA AAGCCATGGT TGCGACTACC TGCAGGGCTA CCTGTTGGGG CGCCCCGTAC CGCTGGCCGA GTTGCGCCCA CTGCTGGAGC GGTTGCAGCG CCAGAATGGC CGGATCACAC CTTGTTGCGG TACAGCTCTA CCAGGGTCGC CGGATCTTTT TGCAGGTAAC CCTGGCTACC GTGCAAGCGC ATCAGTTGCG CGGCAAGGCC ACTGA
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Protein sequence | MEWLGLQLFT DLPATGRIVI DCRHEPLLVL LAYFVACAAC FATLDMAERQ SHSDDPTAHR QWNMLGACCL AGGIWAMHFI SMLAFRAPVD VHYDVSLTIL SLLIALGVAW LAMHSLERSN MRAHYFVPSA GLIGLGIILM HFVGMAAMET GARQYYQTGL LLASAAIALL TALTALYLAR YLRNGSGTLY QAMKYGASLL MAGGIVATHF TAMSAMTLVI PADTALRLPS GDNSLQLGLG IGFITLLISG ASISAALADK KLQSKEHDLR RVSVLLSQLD QARASLQQAA HYDALTNLLN RRGFNQVFAE RLVEHQASEN RLAVMFLDID HFKRINDSLG HDAGDELLKV IANHIKAATR NHDLVARFGG DEFCVVTSLN SRDEARHLAQ RIMQRMKDPI DLGGRRMVMT TSIGISIFPD DGSTAEELLK HADLALYQSK DNGRNSLNFF NDSLKARASI ALQLEEELRL ALLEERGLCV HYQPIFDLRS GQVAKLEALV RWQHPQHGLL GPDRFVGIAE ANGLIIDLDL WVLRHACADL AHLQRHGYGE VQVTVNCSAV TLSHDELPNE VEKALFHAGL APRHLELEVT ENALVGDIQR TVSLLKRVRA LGVALSIDDF GTGYSSLAYL KRLPLDVLKI DRTFLQDVPG SQKDREIVQA IIAMAHTLHL RVVSEGVETA EQQAFLESHG CDYLQGYLLG RPVPLAELRP LLERLQRQNG RITPCCGTAL PGSPDLFAGN PGYRASASVA RQGH
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