Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_1118 |
Symbol | |
ID | 1045244 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 1281215 |
End bp | 1282906 |
Gene Length | 1692 bp |
Protein Length | 563 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637144513 |
Product | recombinase-related protein |
Protein accession | NP_743279 |
Protein GI | 26987854 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1961] Site-specific recombinases, DNA invertase Pin homologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.236338 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000608507 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAGCAAGG TTTTCAGCTA CATCAGATTC AGCAGTGCAA AGCAGTCAGC AGGCGACAGC TACGCTAGAC AGGTGAAGGC AGCAAAAGCC TTCTGCGATG AGAACGGCCT AGAAATGGCT GATCCTAGGG AGTATCTGTT CTTCGACAAA GGGCGTTCAG CCTTCAAGGG CAAGCACCTT GATGACACTG GCGAGCTAGC CCGCTTCCTG AGCTATGTAG AGGACAGCAC CATCCCACCG GGAAGCTACT TAGTAGTGGA GTCGCTGGAC CGCCTCTCAC GCGAGAAAGT CAGGGATGCG CTTCCCCGTT TCCTTGACCT GCTGGCCAAA GGCATCAACG TTTACACCAG CGTCGACAAA CGCCTATACA CCAAGGATTA CAACGAACTC GACCTCATCA TCTCGATCAT CTCCATGTCA CGTGCACATG AAGAATCGGC AGTGAAAGGG GGCCGGGTAT CGTCTGCTTG GCGTGAGAAG CAGAAAGCAG CCCGCACCAC TGGCAAGCCC TTGGGCAAGC TCCGTCCTCT CTGGCTGGAT GTGACACCAG ATGGCTATGT GCTCAACCCT GACAAAGCTG CCGTTGTTCG CCGCATCTTC GACCTATCCA CCAAGGGTCA TGGCTCCCGC ATCATTGCAG CAACGTTGAA TCAGGAAGGC ATACCTGCAT TCAGTGCAGG AAGGAAGAAC TTCTCTGGTT TGTGGGGCTT CTCAACAGTG CGTCACATCC TCGACAGCCG GACGACCCTC GGGGAGTATC AGCCTCACAT ATTCACTGAT GGCAAGCGAA CGCCTGATGG CGACCCGATC AAGGACTACT TCCCCTCCGT AGTGACGGAG GATGAATTCT ACCTAGCCCA AGCTGCCCGA ACGTCTCGCA AGACACACAG CGTCACGAAG GCCACCACCA ATTTCAATGT GCTGGCGGGC ATCCTCAATT GTTACAAGTG CGGGTCAGCC ATGCACCTCC AAGGACAGCG TGGCCGTAAG TATTACAAAT GCTCCAAGAC AACCAGAGGA CTGTGTGACG CCGGGATCAT CAGCGCCCCA CGCACCGAGC AAGTGTTCAA GGAGATACTG ACCAAGGTAG ATAGCTTGTC ACTGGTACAG GACAGCTCTG GCAGCTTGCA GAAGTCCTTG CAGATCGTAG AAGGCCGCAT AGCTTCGCTG AAGGCACGTC AGGACGATGC CGAGGCTTCA CACGCTGAAT TCCCATCCCG CATCACTGCG AAGCTGCTGC ACGAGCTAGA AGCCGATATT GGCGCCCTTG AGTCAGAACG AACCGCTATC GCTGAACAGC TGGCATCTGA CAAAGTGATG AGCAAACATG ACTTCTTCGA AAAGCTTGAC CTTGTGTCAT TTGAAGGCCG TGTGGCTGCC AACAACCTTA TCAAGAGGCT TGGCCTGTTC ATCTTCGCTA GCAAGAACGG TAGAACAGAT GAGACGTACT GGGTCAGCAA GAACAACGCC ATTCCACTCC CATTCAGTGC AGAGACGCCA AACCTACTCT TCTACCTGAT GCACCGAGGT AAGGAGATTC AATTTGAAGC GATGTATGAC GAGTACGTAG ACCTTCAGTT GACCCAAGGC GACCTGAACG AGGTGGAAGC CGCCTTTGCC AAAACTGAAT CTTGGGACAG TCTACCGCCT CACATGCTAG CCATGTGGAA AGCCAGACAT ATTATCAAAT AA
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Protein sequence | MSKVFSYIRF SSAKQSAGDS YARQVKAAKA FCDENGLEMA DPREYLFFDK GRSAFKGKHL DDTGELARFL SYVEDSTIPP GSYLVVESLD RLSREKVRDA LPRFLDLLAK GINVYTSVDK RLYTKDYNEL DLIISIISMS RAHEESAVKG GRVSSAWREK QKAARTTGKP LGKLRPLWLD VTPDGYVLNP DKAAVVRRIF DLSTKGHGSR IIAATLNQEG IPAFSAGRKN FSGLWGFSTV RHILDSRTTL GEYQPHIFTD GKRTPDGDPI KDYFPSVVTE DEFYLAQAAR TSRKTHSVTK ATTNFNVLAG ILNCYKCGSA MHLQGQRGRK YYKCSKTTRG LCDAGIISAP RTEQVFKEIL TKVDSLSLVQ DSSGSLQKSL QIVEGRIASL KARQDDAEAS HAEFPSRITA KLLHELEADI GALESERTAI AEQLASDKVM SKHDFFEKLD LVSFEGRVAA NNLIKRLGLF IFASKNGRTD ETYWVSKNNA IPLPFSAETP NLLFYLMHRG KEIQFEAMYD EYVDLQLTQG DLNEVEAAFA KTESWDSLPP HMLAMWKARH IIK
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