Gene PP_1116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_1116 
Symbol 
ID1045248 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp1276657 
End bp1277367 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content53% 
IMG OID637144511 
Productresolvase family site-specific recombinase 
Protein accessionNP_743277 
Protein GI26987852 
COG category[L] Replication, recombination and repair 
COG ID[COG1961] Site-specific recombinases, DNA invertase Pin homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00106717 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACAAACG TTGTTGCTTA CATTCGAGTA TCTACCAAGA GTCAAGGTGA CTCTGGCCTA 
GGTCTGGAAG CCCAGCGTGA TTACATCCAA CGTGCGGCCC AAGCGAACGA CTGGAATGTC
GTTGGTGAAT TTGTGGATGT GGTATCGGGC AAGCTCGCTC TTGAAGATCG TCCAGAAGGT
GCAAAAGCTC TGACAATGTG CAAACAGCAC AATGCTCAAT TGCTGGTGGC AAAGCTGGAT
CGTCTGTCAC GCTCCGTTCT GCACATTGCC CAACTAATGG AGCAAGTTGA TTTCAAAGTG
GCCACGATGC CACAGGCAGA CAAGTTTCAA CTCCACCTGT TCGCCGCCCT TGCCCAACAA
GAGCGGGAGT TTATCGCCAC GCGCACCAAG GAAGCTCTGG CATCACTCCA GAGGCGTGCA
GACGCTGGTG ATGCAGTAGC CCAGCAGAAG GTGGCCAATC GTGCAGAAGC TCAAGCCAAG
GGCCGTGCAG TGGCTGACAT TACAGCGGCC AACAACATCC GTATGAGCAA GATCAACACC
TACCAAACGA ACATCGAGCC TCACCTGAAA TCCTGCCTGC ATGACAAGAT CAGCACGCTT
CAATCTGTAG CCGATTGCCT GAACAGGAAG GGGCTGCGTA CTCCAAGGGG TAGTGAGTTC
AACGCCACTG CTGTACGTCG CCTGATGTTG GCACTCAAGG TTTCCTTCTA A
 
Protein sequence
MTNVVAYIRV STKSQGDSGL GLEAQRDYIQ RAAQANDWNV VGEFVDVVSG KLALEDRPEG 
AKALTMCKQH NAQLLVAKLD RLSRSVLHIA QLMEQVDFKV ATMPQADKFQ LHLFAALAQQ
EREFIATRTK EALASLQRRA DAGDAVAQQK VANRAEAQAK GRAVADITAA NNIRMSKINT
YQTNIEPHLK SCLHDKISTL QSVADCLNRK GLRTPRGSEF NATAVRRLML ALKVSF