Gene PP_1103 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_1103 
Symbol 
ID1045221 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp1258998 
End bp1261448 
Gene Length2451 bp 
Protein Length816 aa 
Translation table11 
GC content65% 
IMG OID637144498 
ProductDEAD-box ATP dependent DNA helicase 
Protein accessionNP_743264 
Protein GI26987839 
COG category[R] General function prediction only 
COG ID[COG1201] Lhr-like helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGCTG CTACCGACCT CGCCAATGCC TGGTTTGCCA AGCGCGGCTG GAAGCCCTTC 
GCCTTCCAGC GGCGCGTATG GGCTGCCGTC GAACGGGGCG AATCCGGTTT GCTGCATGCC
AGTACCGGTG CCGGCAAGAC CTACGCGGTC TGGCTCGCGG CGCTGCGTGC GTTCAAGCCC
AGGCCCCAGG GCCGCCACTT GGCCCCCATA CAGGTGCTGT GGGTGACGCC CATGCGTGCC
CTGGCCGCCG ACACTGCACG TGCGTTACAA GCGCCGCTTG ATGAGCTCCA GCTGCCTTGG
AGCGTAGGGG TGCGCAGCGG CGACACCAAC AGTGCCGAGC GCGCCCGACA GGCCCGGCGG
CTACCCAGTG TGCTGATCAC CACCCCCGAA AGCCTGACCC TGCTGCTGAC CCGGGCAAAG
GCACGTGAGG ATTTCGCCAC GCTGCAACTG GTGGTGGTGG ATGAATGGCA CGAGCTGCTT
GGCAACAAGC GCGGGGTACA ACTGCAGCTG GCCTTGGCGC GCCTGCGGCA TTGGCACCCG
GGCCTACCGA CCTGGGGCTT GTCGGCAACC CTCGGCAACC TGCAACACGC ACGGGATGTC
TTGCTGCCCC AGGGCGGCCT GCTGGTGCAA GGCCGGCAAG ACAAGGCACT GCAAGTCGAC
ACCCTGCTGC CAAAAGCGAT CGAGCGCTTC CCTTGGGCTG GACACATGGG CCTGAAGATG
CTCGACCAGG TCTGTCACGA GATCGATGCC AGTGCCAGTA GCCTGGTGTT CACCAACACC
CGCGCCCAGG CAGAAATCTG GTATCAGGCC CTGCTTGAGG CCCGCCCGGA CTGGGCCGGG
CTGATCGCCC TGCACCACGC CTCGCTGGCC CGCGATACCC GCGACTGGGT CGAGCGCAGC
CTCAAGCAAG GCAGCCTCAA GGCGGTGATC TGCACGTCCA GCCTGGACCT GGGCGTGGAC
TTTCTGCCCG TGGAACGGGT GCTGCAAATC GGCTCGGCCA AGGGCATCGC CCGCCTGATG
CAGCGGGCGG GTCGCTCAGG ACACGCGCCT GGGCGGCGCT CCAGGGTCAC CCTGGTGCCC
ACCCATAGCC TGGAACTGGT GGAAGCGGCG GCGGCCCGGC AGGCGCTGTT AGCCGGCCAC
ATCGAAGCCC GCTTTTCACC GCGCCTGTGC ATGGACGTGC TGGTACAGCA TCTGGTCAGC
ATGGCCTTGG GCAGCGGTTT TCGCCCGGAG CAACTGCTCG CCGAAGTGCG CAGCACCTGG
GCTTTTCGCC AGTTGCGCGA CAGCCAATGG CAATGGGCGC TGGACTTCGT CTGCCACGGC
GGCAGCTCAT TGACCGCCTA CCCGGACTAC CAGCGTGTCG AGCGCCAGGC CGACGGAGTT
TACCGGGTTA CCAGCGAACG CCTGGCGCGG CGCCACCGCA TGGGCATCGG CACCATCGTC
AGCGATGCCA ACCTGCAACT GAAATACTGG AGCAAGGGCG GCGGCGGGAA AACGCTGGGC
AGTGTTGAAG AAGCGTTCAT CGCCCGCCTG CGCCCCGGCG ATACCCTGGT GTTTGCCGGG
CGGGTACTAG AGCTGGTACG CGTGGAAAAC ATGACGGCCT ATGTGCGTCG CAGCACGGCG
CGCAAGGCTG CGGTAGCGCG CTGGAACGGC GGGCGCATGC CGCTCTCGAG CGAACTGGCC
GATGCGCTGG TCGAGCAGCT CGATGCTGCC GCCCATGAAC GCTTTGAGGG GCCGGAAATG
CGCGCAGTAC GCCCGCTGCT TGCGCTTCAA GCGCAGTGGT CAGCCTTGCC CACCACAAGC
ACACTGCTGG CCGAGACCTT CAAATCCCGC CAGGGCTGGC ACCTGTTCCT GTATCCCTTT
GCCGGGCGCA TGGCCAACCT GGGCTTGGCC AATCTGATTG CCTGGCGGGT CAGCCGCGCA
CAGCCGCTGT CGGTGTCGAT TGCCGTCAAC GATTACGGAT TCGAACTCCT CAGCCCTGCC
CAGGTGGACT GGGCCAGTCA CCTGCCGCAA GCACTCGGCA CCGCGGACCT GCTGGAAGAT
GTGCTGGCCA GCCTGAATGC CGGGGAGATG GCACTGCGGC GCTTTCGTGA AATTGCCCAG
ATTGCCGGGC TGGTGTTTGG CGGCTATCCC GCCGCGCAGA AGAGCACGCG GCAAATCCAG
GCCTCCAGCG GGCTATTCTA TGAGGTGTTT CGCAAGCATG ACGCGGGGAA TTTGCTGCTT
GGCCAGGCGC GGGATGAAGT ATTGAGCGAA GAGCTGGAAA TCGAACGGCT GCATCGGCAA
CTGCTGAAAA TGAGTGAGTT GCAACTGGAC CTGCAGGCGT TGAGGCGGCC AGGGCCACTG
GCGTTTGCCT TGTTGGTGGA AGGCATGCGC GAGACATTGA GCACCGAGAA GCTGGCAGAC
CGCATTGCGC GGATGGTGGC GGAACTGGAA CAAGCGGCGA ACGCGGGATG A
 
Protein sequence
MPAATDLANA WFAKRGWKPF AFQRRVWAAV ERGESGLLHA STGAGKTYAV WLAALRAFKP 
RPQGRHLAPI QVLWVTPMRA LAADTARALQ APLDELQLPW SVGVRSGDTN SAERARQARR
LPSVLITTPE SLTLLLTRAK AREDFATLQL VVVDEWHELL GNKRGVQLQL ALARLRHWHP
GLPTWGLSAT LGNLQHARDV LLPQGGLLVQ GRQDKALQVD TLLPKAIERF PWAGHMGLKM
LDQVCHEIDA SASSLVFTNT RAQAEIWYQA LLEARPDWAG LIALHHASLA RDTRDWVERS
LKQGSLKAVI CTSSLDLGVD FLPVERVLQI GSAKGIARLM QRAGRSGHAP GRRSRVTLVP
THSLELVEAA AARQALLAGH IEARFSPRLC MDVLVQHLVS MALGSGFRPE QLLAEVRSTW
AFRQLRDSQW QWALDFVCHG GSSLTAYPDY QRVERQADGV YRVTSERLAR RHRMGIGTIV
SDANLQLKYW SKGGGGKTLG SVEEAFIARL RPGDTLVFAG RVLELVRVEN MTAYVRRSTA
RKAAVARWNG GRMPLSSELA DALVEQLDAA AHERFEGPEM RAVRPLLALQ AQWSALPTTS
TLLAETFKSR QGWHLFLYPF AGRMANLGLA NLIAWRVSRA QPLSVSIAVN DYGFELLSPA
QVDWASHLPQ ALGTADLLED VLASLNAGEM ALRRFREIAQ IAGLVFGGYP AAQKSTRQIQ
ASSGLFYEVF RKHDAGNLLL GQARDEVLSE ELEIERLHRQ LLKMSELQLD LQALRRPGPL
AFALLVEGMR ETLSTEKLAD RIARMVAELE QAANAG