| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1078 |
|---|
| Symbol | |
|---|
| ID | 1045042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 1236997 |
|---|
| End bp | 1238106 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637144473 |
|---|
| Product | ABC transporter ATP-binding protein |
|---|
| Protein accession | NP_743239 |
|---|
| Protein GI | 26987814 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.697393 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAC CCCTACTGCT CAACCTGCGC AACCTCGCCT GCGGCTATGG CGACCAGCGC
ATCGTCCAGA ACCTCAACCT GCACCTGAAC GCAGGCGACA TCGGTTGCCT GCTGGGTTCA
TCCGGTTGTG GCAAGACCAC CACCCTGCGC GCCATCGCCG GTTTCGAGCC GGTGCACGAA
GGTGAAATCC ACCTGGCCGG TGAGGTCATT TCCCGGGCTG GCTTCACCCT GGCCCCGGAA
AAGCGCCGCA TCGGCATGGT ATTTCAGGAC TACGCACTGT TCCCGCACCT GACCGTGGCG
CAGAACATTG CCTTTGGTAT CGCCAAACAC CCACGCCAGG CGGCCGTCAT CGAAGAGATG
CTGGAGCTGG TCAAACTCGG CGGGCTGGGC GGGCGTTACC CGCATGAGCT GTCCGGCGGC
CAGCAGCAAC GTGTCGCCCT GGCCCGGGCG CTGGCGCCCG AGCCGCAACT GCTGCTGCTT
GACGAGCCAT TCTCCAACCT CGACGTGGAG CTGCGCCGGC GCCTGAGCCA TGAGGTTCGC
GACATTCTCA AAAGCCGCGG TACCAGCGCC ATTCTGGTCA CCCATGACCA GGAAGAAGCC
TTTGCCGTCA GCGACCAGGT CGGCGTCTTC AAGGAAGGTC GCCTGGAACA GTGGGACACG
CCCTACAACC TTTACCACGA ACCGCAGACG CCATTCGTGG CGAGTTTCAT CGGCCAGGGG
TACTTCATCC GTGGGCAAAT GAGCAGCCAC GAGGCGGTCA ATACCGAAGT GGGTGAGCTG
CGCGGTAACC GCGCCTACAT CATGGCGCCG GGCAGCTCGG TGGATGTACT GCTGCGCCCG
GATGATATCG TGCATGCACC TGGCAGCGCG CTCATGGCGA ACATCGTGGG CAAGAGTTTC
CTTGGGGCAT CCACGCTCTA CCGCCTGCAG TTGCCCACCG GTAGCCAGCT CGAAGCGATC
TTCCCTAGCC ATAACGACCA CGAGATCGGT GAGAATGTGG AGATTGCAGT GAAGGCCGAT
CACCTCGTGC TATTCCCGGT ACCGGGTAGC GTTGCGGCAC AGTTGCCACG CCAGGAGAAT
GGCGTGCGTC GATACAGTTC GGCGACTTGA
|
|---|
| Protein sequence | MSQPLLLNLR NLACGYGDQR IVQNLNLHLN AGDIGCLLGS SGCGKTTTLR AIAGFEPVHE
GEIHLAGEVI SRAGFTLAPE KRRIGMVFQD YALFPHLTVA QNIAFGIAKH PRQAAVIEEM
LELVKLGGLG GRYPHELSGG QQQRVALARA LAPEPQLLLL DEPFSNLDVE LRRRLSHEVR
DILKSRGTSA ILVTHDQEEA FAVSDQVGVF KEGRLEQWDT PYNLYHEPQT PFVASFIGQG
YFIRGQMSSH EAVNTEVGEL RGNRAYIMAP GSSVDVLLRP DDIVHAPGSA LMANIVGKSF
LGASTLYRLQ LPTGSQLEAI FPSHNDHEIG ENVEIAVKAD HLVLFPVPGS VAAQLPRQEN
GVRRYSSAT
|
|---|
| |