| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1048 |
|---|
| Symbol | xcpS-1 |
|---|
| ID | 1044322 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 1199144 |
|---|
| End bp | 1200346 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637144443 |
|---|
| Product | general secretion pathway protein F |
|---|
| Protein accession | NP_743209 |
|---|
| Protein GI | 26987784 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.506119 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACCT ATCGCTACCA GGCCGTTGAC CTCGCCGGCA AATCGCACAA GGCCAGCCTG
CAGGCTGACA GTGAACGCCA CGCCCGCCAG CTGTTGCGCG AGCAGGGCCT GTTCGCCCGC
CAGTTGCAGC GTCATGACGC CGGCAGCCGA CAACCCCGAC GCCAGCGCCT GAGCCGCGCC
CAGCTGTGTG AGCTGACCCG TCAGCTGGCC ACCTTGACCG GGGCCGGCAT TCCCTTGGTC
GATGCCCTTG CCACCCTTGA ACGGCAACTG CGTCAGCCTG CCCTGCACAG TGTGCTGGTG
GCCTTGCGCG GCTCACTCGC CGAAGGCCTG GGCCTGGCCC GCAGCCTGGC CCGGCAGGGC
GCACCGTTCA CTGGCTTGTA CTGCGCGCTG GTCGAGGCCG GCGAACGTTC CGGGCACCTG
GCCCAGGTGC TGACCCGCTT GGCCGACCAC CTGGAGCAGG TGCAACGCCA GCAACACAAG
GCCCGCACAG CGCTGATCTA CCCCGCTGTG CTGATGGGTG TGTCGCTGGC CGTGGTGATT
GGCCTGATGA CGTTCGTCGT GCCCAAACTC ACCGAGCAAT TCGCCCATGC CGGGCAAAGC
CTGCCGCTGA TCACCTCGTT GCTGATCGGC CTGAGCCAGG GGCTGGTGCA CGCCGGGCCC
TGGTTGTTAG GGGTGGCGCT GTTGCTCGGG GGGCTGGCTG GCTGGTTGTT GCGCAAACCG
CACTGGTGCC TGCGTCGCGA CCAGCTGCTG CTGCGCCTGC CGCGTATTGG CAACCTGCTG
CAGGTGCTGG AAAGCGCGCG TCTGGCGCGC AGCCTGGCGA TTCTCTGTGG CAGTGGCGTG
GCCCTGCTCG AAGCCTTGCA AGTGGCCACC GAAACCATCG GCAACCGGCG TATCCGCCTG
GCCATGGAGC AGGTGCGCCA ACACGTGCAG GGCGGCACCA GCCTGCACCG TGCGCTGGAT
GCCAGCCAGC AATTCCCGCC GCTGCTGGTG AACATGGTTG GCAGCGGCGA GGCCAGCGGC
ACCCTGGCGG ACATGCTCGA GCGCGTGGCC GACGACCAGG AGCGCGGCTT TGCCCGCCAG
GTCGATACCG CCATGGCGCT GTTCGAACCC CTGATGATCC TGGTGATGGG CGCCGTGGTG
CTGTTCATCG TGCTGGCGGT GCTGCTGCCG ATCATGCAAC TCAACCAGGG CCTGCAATTG
TGA
|
|---|
| Protein sequence | MPTYRYQAVD LAGKSHKASL QADSERHARQ LLREQGLFAR QLQRHDAGSR QPRRQRLSRA
QLCELTRQLA TLTGAGIPLV DALATLERQL RQPALHSVLV ALRGSLAEGL GLARSLARQG
APFTGLYCAL VEAGERSGHL AQVLTRLADH LEQVQRQQHK ARTALIYPAV LMGVSLAVVI
GLMTFVVPKL TEQFAHAGQS LPLITSLLIG LSQGLVHAGP WLLGVALLLG GLAGWLLRKP
HWCLRRDQLL LRLPRIGNLL QVLESARLAR SLAILCGSGV ALLEALQVAT ETIGNRRIRL
AMEQVRQHVQ GGTSLHRALD ASQQFPPLLV NMVGSGEASG TLADMLERVA DDQERGFARQ
VDTAMALFEP LMILVMGAVV LFIVLAVLLP IMQLNQGLQL
|
|---|
| |