| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_1008 |
|---|
| Symbol | |
|---|
| ID | 1044941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 1149239 |
|---|
| End bp | 1149751 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637144403 |
|---|
| Product | ECF subfamily RNA polymerase sigma factor |
|---|
| Protein accession | NP_743169 |
|---|
| Protein GI | 26987744 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.719302 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTCAGT CCCGGTTCAA TTCCGTCTTC CTCGTTCAGC GCCTCACCCT GCTGCGTACC
CTGCAGCGCA TGGTCGGTAA CCCCAGCACG GCCGAAGACC TGCTGCAGGA AACCTACCTG
CGGGTGTCCC GCGCGCTGGG CGAGCGGCCC ATCGAGCACA TCGAGCCGTT CGTGTTTCAG
ACCGCGCGCA ACCTGGCGCT GGACCACCTG CGTGCACGCC GGGTGCAGGC ACGCATGCTG
GTCGACGACG TGCCCGACGA AGTGCTGCAC AGTGTCGCCG CGCCAGCCAC CAGCAGCGAG
GATGCCGCCC ACGCCGAGCA GTTGCTCAAG CACCTCAGCG TCAGCCTCAA TCAACTGAGC
GAACGCCAAC AACGCATTTT CATCCTCAGC CGCCTGCATG GCGCCACCTA TCTGGAAATC
GCCGAACAAC TGAGTGTTTC GCCCAGCACG GTACAAAAGG AACTGAAACT GATCATGGCA
ATCTGCATGG GTGTTGCCGA ACGACTCAAG TGA
|
|---|
| Protein sequence | MSQSRFNSVF LVQRLTLLRT LQRMVGNPST AEDLLQETYL RVSRALGERP IEHIEPFVFQ
TARNLALDHL RARRVQARML VDDVPDEVLH SVAAPATSSE DAAHAEQLLK HLSVSLNQLS
ERQQRIFILS RLHGATYLEI AEQLSVSPST VQKELKLIMA ICMGVAERLK
|
|---|
| |