Gene PP_0987 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0987 
Symbolsda-2 
ID1044912 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp1125168 
End bp1126544 
Gene Length1377 bp 
Protein Length458 aa 
Translation table11 
GC content65% 
IMG OID637144382 
ProductL-serine dehydratase 1 
Protein accessionNP_743148 
Protein GI26987723 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1760] L-serine deaminase 
TIGRFAM ID[TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCACTGA GCGTCTTCGA CCTGTTCAAG ATCGGCATCG GCCCCTCCAG CTCCCACACG 
GTCGGCCCGA TGCGCGCCGC TGCGCGGTTT GCCGAAGGGC TGCGCCGTGA CGGCCTGCTG
GCCCGCACCG CCAGCGTCAA AGCCGAGCTG TATGGCTCAC TGGGCGCCAC AGGCAAAGGC
CACGGCAGTG ACAAAGCCGT GCTGCTGGGC CTTGAAGGCG AACACCCGGA CATTATCGAC
ACCGACAGCA TTCCCGCCCG CCTGCAGGTC ATCCGCGACA GCGGACACAT CAACCTGCTG
GGCGAACACA GCATTGCGTT CATCGAAAAG CAGCACCTGG CGATGATCCG CAAGCCGTTG
GACTACCACC CCAACGGCAT GATCTTCCGC GCGTTCGACG ACGCAGGCCT GCAAATCCGA
AGCCGCGAGT ATTACTCGGT AGGCGGTGGT TTCGTGGTCG ACGAGGACGC TGCCGGCCAT
GACCGCATCG TCGAAGACAC CACGGTGCTG GCCTATCCGT TCAAGACCGC CAAGGCGCTC
CTCGGCCACT GCACCGCGCA TGACCTGTCG GTGAGCCAGG TGATGCTGGC CAATGAGTCC
GCCTGGCGCC CAGAAGCAGA AACCCGGGCC GGGCTGCTGC GCATCTGGCA GGTGATGCAA
GATTGCGTCG CGGCAGGTTG CCAGCATGAG GGCATATTAC CGGGAGGGCT CAAGGTCAAG
CGCCGCGCGC CGGCCCTGTA CCGCCAACTG AGCGGCCACC CGGAAGCCAG CCTGCGTGAC
GCCCTGTCCG TGCTCGACTG GGTCAACCTC TACGCCTTGG CGGTGAACGA GGAAAACGCC
TACGGCGGTC GTGTGGTCAC CGCCCCTACC AACGGCGCAG CGGGCATCGT CCCGGCAGTC
CTTCACTACT ACATGCGCTT CGTCCCGGGG GCCAGCGAGG ATGGGGTGGT GCGCTTTCTG
CTCACCGCCG CAGCCATCGG CATCCTGTAC AAGGAGAACG CCTCCATCTC CGGCGCCGAA
GTGGGCTGCC AGGGCGAGGT CGGCGTCGCC TGCTCGATGG CCGCCGGGGC GCTGTGCGAA
GTGATGGGCG GCAGCGTGCA GCAGGTGGAG AACGCCGCCG AAATAGGCAT GGAACACAAC
CTGGGCCTGA CCTGCGACCC GATCGGCGGC CTCGTACAGG TGCCCTGTAT CGAGCGCAAT
GCGATGGGCT CGGTGAAGGC CATCAACGCG GTACGCATGG CCCTGCGCGG CGACGGGCAG
CACTACGTGT CGCTGGACAA GGTCATCCGC ACCATGCGCC AGACCGGCGC CGACATGAAA
AGCAAATACA AAGAGACCGC CCGTGGCGGC CTGGCCGTCA ACATCATCGA ATGTTGA
 
Protein sequence
MSLSVFDLFK IGIGPSSSHT VGPMRAAARF AEGLRRDGLL ARTASVKAEL YGSLGATGKG 
HGSDKAVLLG LEGEHPDIID TDSIPARLQV IRDSGHINLL GEHSIAFIEK QHLAMIRKPL
DYHPNGMIFR AFDDAGLQIR SREYYSVGGG FVVDEDAAGH DRIVEDTTVL AYPFKTAKAL
LGHCTAHDLS VSQVMLANES AWRPEAETRA GLLRIWQVMQ DCVAAGCQHE GILPGGLKVK
RRAPALYRQL SGHPEASLRD ALSVLDWVNL YALAVNEENA YGGRVVTAPT NGAAGIVPAV
LHYYMRFVPG ASEDGVVRFL LTAAAIGILY KENASISGAE VGCQGEVGVA CSMAAGALCE
VMGGSVQQVE NAAEIGMEHN LGLTCDPIGG LVQVPCIERN AMGSVKAINA VRMALRGDGQ
HYVSLDKVIR TMRQTGADMK SKYKETARGG LAVNIIEC