Gene PP_0952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0952 
SymbolrpoN 
ID1044867 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp1094565 
End bp1096058 
Gene Length1494 bp 
Protein Length497 aa 
Translation table11 
GC content60% 
IMG OID637144347 
ProductRNA polymerase factor sigma-54 
Protein accessionNP_743113 
Protein GI26987688 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACCAT CGCTCGTCCT AAAAATGGGC CAGCAACTGA CGATGACACC TCAGTTGCAA 
CAGGCCATCC GCCTGCTCCA GCTTTCTACC CTGGACCTCC AACAGGAAAT CCAGGAAGCG
CTGGAGTCGA ACCCGATGCT CGAACGTCAG GAAGACGGCG AAGACTTCGA CAACAGCGAC
CCGATGGCCG ACAACGCCGA GAACAAGCCG GCCGCCGAAG TTCAGGACAA CAGTTTCCAG
GAAAGCACCG TCAGCGCCGA CAACCTGGAA GACGGTGAGT GGAGCGAGCG CATCCCCAAC
GAGCTCCCGG TCGATACCGC TTGGGAAGAC ATCTACCAGA CCAGCGCCAG CAGCCTGCCG
AGCAACGATG ACGACGAATG GGACTTCACC ACGCGCACAT CGGCCGGCGA AAGCCTGCAA
AGCCACCTGC TGTGGCAGTT GAACCTGGCA CCGATGTCCG ACACCGACCG CTTGATTGCC
GTGACCCTGA TCGACAGCAT CAACGGCCAG GGCTACCTGG AAGACACACT CGAAGAAATC
TGCGCCGGTT TCGACCCGGA GCTGGATATC GAACTGGACG AGGTCGAAGC GGTACTGCAC
CGCATCCAGC AGTTCGAGCC GGCTGGCGTT GGCGCCCGCA ACCTCGGCGA ATGCCTGTTG
CTGCAACTGC GCCAGCTGCC CGCTACAACT CCGTGGATGA CCGAAGCCAA GCGCCTGGTC
ACCGATTTCA TCGACCTGCT CGGCAGCCGT GACTACAGCC AGCTGATGCG GCGGATGAAA
ATCAAGGAAG ACGAGCTGCG CCAGGTCATC GAACTGGTGC AAAGCCTTAA CCCGCGCCCT
GGTTCGCAGA TCGAGTCCAG CGAGCCCGAG TACGTGGTGC CCGACGTCAT CGTGCGCAAG
GACAGCGACC GTTGGCTGGT AGAACTGAAC CAGGAAGCCA TCCCACGCCT GCGCGTCAAC
CCACAATACG CCGGCTTCGT GCGCCGTGCC GACACCAGCG CCGACAACAC CTTCATGCGC
AACCAGCTGC AGGAAGCGCG CTGGTTCATC AAGAGCCTGC AAAGCCGTAA CGAAACCCTG
ATGAAGGTTG CCACGCAGAT CGTCGAGCAC CAGCGCGGCT TCCTCGACCA CGGCGACGAA
GCGATGAAGC CGTTGGTACT GCATGACATT GCCGAAGCCG TAGGCATGCA CGAATCGACC
ATTTCGCGGG TTACCACGCA GAAATACATG CACACCCCGC GTGGCATCTA CGAACTGAAA
TACTTTTTCT CCAGCCATGT CAGCACCTCC GAAGGCGGAG AATGCTCGTC CACGGCGATC
CGCGCGATCA TCAAGAAACT GGTTGCGGCG GAAAATCAGA AAAAGCCATT GAGTGACAGC
AAGATCGCTG GTTTACTGGA GGCACAAGGC ATCCAGGTAG CCCGTCGCAC CGTCGCCAAG
TACCGCGAGT CCCTCGGCAT CGCACCGTCG AGCGAACGCA AGCGACTGAT GTAG
 
Protein sequence
MKPSLVLKMG QQLTMTPQLQ QAIRLLQLST LDLQQEIQEA LESNPMLERQ EDGEDFDNSD 
PMADNAENKP AAEVQDNSFQ ESTVSADNLE DGEWSERIPN ELPVDTAWED IYQTSASSLP
SNDDDEWDFT TRTSAGESLQ SHLLWQLNLA PMSDTDRLIA VTLIDSINGQ GYLEDTLEEI
CAGFDPELDI ELDEVEAVLH RIQQFEPAGV GARNLGECLL LQLRQLPATT PWMTEAKRLV
TDFIDLLGSR DYSQLMRRMK IKEDELRQVI ELVQSLNPRP GSQIESSEPE YVVPDVIVRK
DSDRWLVELN QEAIPRLRVN PQYAGFVRRA DTSADNTFMR NQLQEARWFI KSLQSRNETL
MKVATQIVEH QRGFLDHGDE AMKPLVLHDI AEAVGMHEST ISRVTTQKYM HTPRGIYELK
YFFSSHVSTS EGGECSSTAI RAIIKKLVAA ENQKKPLSDS KIAGLLEAQG IQVARRTVAK
YRESLGIAPS SERKRLM