Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0937 |
Symbol | cafA |
ID | 1044846 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 1078804 |
End bp | 1080261 |
Gene Length | 1458 bp |
Protein Length | 485 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637144332 |
Product | ribonuclease, Rne/Rng family |
Protein accession | NP_743098 |
Protein GI | 26987673 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGAAG AGATCCTGAT CAACATCACC CCGATGGAGT CACGTGTGGC GGTGGTGGAA AACGGGGTGC TGCAGGAGGT GCACGTCGAG CGCACCCAGC GCCGTGGCAT CGTCGGCAAT ATCTACAAGG GCAAGGTGGT GCGTGTGCTG CCAGGCATGC AGGCGGCCTT CGTCGACATT GGCCTCGAAC GCGCAGCGTT TATCCATGCC TCGGAAATCT CCCAGCGCGA AGGCTCGGCG GTAGAGAACA TCACCGCACT GGTACATGAA GGCCAGGCCC TGGTGGTGCA GGTGACCAAG GACCCGATCG GCACCAAGGG TGCACGCCTG ACCACCCAGC TATCGATTCC GTCGCGTTAC CTGGTGTACA TGCCACGCAG CAGCCATGTC GGTATTTCGC TGAAAATCGA GGACGAAGCC GAGCGTGAGC GCCTCAAGCA AGTGGTCAGC GACTGCATGG ATGGCGAAAA CATCAAGGAT GCCGGCGGCT TCATCTTGCG CACCGCCGCC GAAGGCGCGC GTGCCGAGGA GATCTTGCAG GACATCCGTT ACCTGCGCCG CCTGTGGGAG CAGATTGGCA CCCAGATCAA GACCTGCGGC GCGCCCACGG TCATTTACGA AGACCTTGGC CTGGCCCTGC GTACCCTGCG CGACCTGGTC AACCCGAAGA TCGAGAAGAT CCGCATCGAC TCGCGGGAAA CCTTCCAGAA GACCACGCAG TTCGTCGGCG AGTTGATGCC GGAAATTGCC GACCGCCTCG AACACTACCC GGGCGAGCGC CCAATCTTTG ACCTGTACGG CGTCGAAGAC GAGATCCAGC GGGCTCTGGA GCGCAAGGTG CCGTTGAAGT CCGGCGGTTA CCTGGTGGTC GACCCGGCCG AAGCGATGAC CACCATCGAT GTCAATACCG GGGCTTTCGT CGGCCATCGC AACCTCGAAG AAACCATCTT CAAGACCAAC CTCGAGGCTG CTACCGCCAT CGCCCGACAA CTGCGCCTGC GCAACATTGG CGGCATCATC ATCATCGACT TCATCGACAT GGAAGACGAA GATCACCAGC GCCAGGTACT GCGTACCCTG GAAAAACAGC TGGAGCGCGA TCACGCCAAG ACCAACATCA TCGGCATCAC CGAGCTGGGC CTGGTGCAGA TGACCCGCAA GCGCACGCGG GAAAGCCTGG AACAGGTGCT TTGCGAGCCG TGCCTGGCCT GTCAGGGCCG CGGCAAGCTG AAAACGCCCG AGACCATCTG TTACGAAATA TTCCGCGAGA TCCTGCGTGA GGCCCGTGCC TATCAGGCTG AAGGCTACCG TGTGCTGGCC AACCAGAAGG TGGTCGACCG CCTGCTGGAT GAAGAGTCAG GCAACGTGGC GGAACTGGAA GCTTTCATCG GTCGAACCAT TCGCTTCCAG GTCGAGTCGA TGTATTCGCA GGAACAATAC GACGTGGTGC TGCTCTGA
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Protein sequence | MSEEILINIT PMESRVAVVE NGVLQEVHVE RTQRRGIVGN IYKGKVVRVL PGMQAAFVDI GLERAAFIHA SEISQREGSA VENITALVHE GQALVVQVTK DPIGTKGARL TTQLSIPSRY LVYMPRSSHV GISLKIEDEA ERERLKQVVS DCMDGENIKD AGGFILRTAA EGARAEEILQ DIRYLRRLWE QIGTQIKTCG APTVIYEDLG LALRTLRDLV NPKIEKIRID SRETFQKTTQ FVGELMPEIA DRLEHYPGER PIFDLYGVED EIQRALERKV PLKSGGYLVV DPAEAMTTID VNTGAFVGHR NLEETIFKTN LEAATAIARQ LRLRNIGGII IIDFIDMEDE DHQRQVLRTL EKQLERDHAK TNIIGITELG LVQMTRKRTR ESLEQVLCEP CLACQGRGKL KTPETICYEI FREILREARA YQAEGYRVLA NQKVVDRLLD EESGNVAELE AFIGRTIRFQ VESMYSQEQY DVVLL
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