| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0914 |
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| Symbol | |
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| ID | 1044813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 1055988 |
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| End bp | 1058069 |
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| Gene Length | 2082 bp |
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| Protein Length | 693 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637144309 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | NP_743075 |
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| Protein GI | 26987650 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.398639 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATGCG CATGGATTAA GGAAACCCCA TTGAAGCTGG AATTGCGGAA CAGCTTGTCG
GTCAAGTTGC TCAGGGTCGT GCTGCTGTCG GCGCTGGCGG TCGGCGTCGT GCTCAGCTGT
GCGCAAATCA TCTATGACAC CTACAAGACC CGCCAGGCCG TGGACAGCGA CGCCCAGCGC
ATCCTCGACA TGTTCCGCGA TCCTTCGACC CAGGCGGTTT ACAGCCTCGA CCGTGAAATG
GGCATGCAGG TCATGGAAGG CCTGTTCCAG GACGAATCAG TGCGCATGGC CTCCATTGGC
CATCCCAACG AAACCATGCT GGCAGAAAAG TCCCGCCCGC TGCAGGACAT GTCCATGCGC
TGGCTCACCG ACCTCATCCT CGGCCAGGAG CGCACCTACA CCACGCAACT GGTCGGCCGT
GGACCTTACA GCGAATACTA CGGCGACCTC AGCATTACCC TCGATACCTC CTCCTACGGC
AAAGATTTCC TGATCAACGC GGTGATCATC TTCATATCCG GCGTGCTGCG GGCCATGGCC
ATGGGCCTGG TGCTTTACCT GGTCTACCAC TGGCTGCTGA CCAAACCGCT GTCGAAGATC
ATCGAGCACC TCACCCAGAT CAACCCTGAC CGCCCCAGCC AGCACCAGAT ACCGCTGCTC
AAGGGCCACG AGAAAAACGA GCTGGGCCTG TGGGTTAACA CCGCCAACCA GTTGCTGGCC
TCGATCGAGC GCAACACCCA TTTGCGCCAC GAGGCGGAAA ACAGCCTGCA GCGCATGGCC
CAGTACGACT TCCTCACCGG CCTGCCCAAC CGCCAGCAAC TGCAGCAGCA ACTGGACAAG
ATCCTCGTCG ACGGCGGCCG CCTGCAGCAC CGTGTGGCAG TGCTGTGCGT TGGCCTGGAC
GACTTCAAGG GTATCAACGA ACAATTCAGC TACCAGGTCG GTGACCAGTT GCTGCTGGCC
CTGGCCGATC GACTACGCGC CCACAGCGGC CGCCTGGGCG CTCTGGCGCG GCTGGGCGGC
GACCAGTTCG CCCTGGTACA GGCCAATATC GAGCAGCCCT ATGAGGCTGC CGAACTGGCG
CAAAGCATTC TTGACGACCT GGAAGTACCG TTCGACCTCG ACCACGAGCA AATCCGCCTG
CGCGCGACCA TCGGCATCAC CCTCTTCCCC GAAGACGGTG ACAGCACCGA AAAACTGCTG
CAGAAAGCCG AACAGACCAT GACCCTGGCC AAGGCCCGCT CGCGCAACCG CTACCAGTTC
TATATCGCCA GCGTCGACAG CGAGATGCGT CGCCGTCGCG AACTGGAAAA GGACCTGCGT
GAAGCCCTGC CCCGCAACCA GCTGTACCTG GTGTACCAGC CACAGATCAG CTACCGCGAC
CACCGAGTGG TCGGCGTAGA GGCCCTGCTA CGCTGGCAGC ACCCGGAACT GGGCATGGTG
CCACCCGACC AGTTCATCCC CTTGGCCGAG CAGAACGGCA GCATCATCAG CATCGGCGAA
TGGGTGCTTG ACCAGGCCTG TCGGCAACTG CGCGAATGGC ACGACCAGGG CTTCAGCGAC
CTGCGCATGG CGGTCAACCT GTCTACCGTG CAACTGCACC ACAGCGAGCT GCCACGGGTG
GTCAACAACC TGCTGCAAGC CTATCGCCTA CCACCGCGCA GCCTGGAACT GGAAGTCACC
GAAACCGGCC TGATGGAAGA CATCAGCACC GCCGCCCAGC ACCTGTTGAG CCTGCGCCGC
TCCGGGGCGC TGATTGCCAT CGACGACTTC GGCACCGGCT ACTCGTCCCT CAGCTATCTG
AAGTCGCTGC CCCTGGACAA GATCAAGATC GACAAGAGTT TCGTTCAGGA CCTGCTCGAC
GACGATGACG ACGCCACCAT CGTTCGCGCC ATCATCCAGC TGGGCAAGAG CCTGGGGATG
CAGGTGATCG CCGAGGGCGT GGAAACGGCC GAGCAGGAAA CCTACATCGT GGCCCAGGGT
TGCCACGAGG GCCAGGGCTA CCACTACAGC AAGCCCCTTT CGGCCCGTGA ACTGACCCAC
TTCCTCAAAC AAGCGCAACG CAACCGGGTT TCGGTGTCCT GA
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| Protein sequence | MPCAWIKETP LKLELRNSLS VKLLRVVLLS ALAVGVVLSC AQIIYDTYKT RQAVDSDAQR
ILDMFRDPST QAVYSLDREM GMQVMEGLFQ DESVRMASIG HPNETMLAEK SRPLQDMSMR
WLTDLILGQE RTYTTQLVGR GPYSEYYGDL SITLDTSSYG KDFLINAVII FISGVLRAMA
MGLVLYLVYH WLLTKPLSKI IEHLTQINPD RPSQHQIPLL KGHEKNELGL WVNTANQLLA
SIERNTHLRH EAENSLQRMA QYDFLTGLPN RQQLQQQLDK ILVDGGRLQH RVAVLCVGLD
DFKGINEQFS YQVGDQLLLA LADRLRAHSG RLGALARLGG DQFALVQANI EQPYEAAELA
QSILDDLEVP FDLDHEQIRL RATIGITLFP EDGDSTEKLL QKAEQTMTLA KARSRNRYQF
YIASVDSEMR RRRELEKDLR EALPRNQLYL VYQPQISYRD HRVVGVEALL RWQHPELGMV
PPDQFIPLAE QNGSIISIGE WVLDQACRQL REWHDQGFSD LRMAVNLSTV QLHHSELPRV
VNNLLQAYRL PPRSLELEVT ETGLMEDIST AAQHLLSLRR SGALIAIDDF GTGYSSLSYL
KSLPLDKIKI DKSFVQDLLD DDDDATIVRA IIQLGKSLGM QVIAEGVETA EQETYIVAQG
CHEGQGYHYS KPLSARELTH FLKQAQRNRV SVS
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