Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0869 |
Symbol | |
ID | 1044746 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 1008742 |
End bp | 1009395 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637144264 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | NP_743030 |
Protein GI | 26987605 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1174] ABC-type proline/glycine betaine transport systems, permease component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.476701 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCCTGC TCGACACGTT CGCCCACCTC GACTGGGCCC AGGTGCTGCA ACTGACCTGG CAGCACATCA TGCTGGTCGG CATCGCCGTC GGCCTGGCGA TCCTCGTTGG CGTGCCGCTG GGCATCCTGA TGACCCGCTT CCCGGCAGTG GCCGGCCCGC TGCAGGCCAG CGCCACAGTG CTGCTGACCA TCCCATCGAT TGCGTTGTTC GGCCTTCTGC TGCCGTTCTA CTCCAAGTTC GGCCAAGGGC TGGGCCCCTT GCCGGCGATC ACTGCCGTGT TTCTTTATTC GCTGCTGCCC ATCCTGCGCA ACACCTACCT GGCCCTGACC AATGTCGAGC CCGGTATCCG TGAAGCCGCG CGTGGCATTG GCATGACCTT CGGCCAGCGC CTGCGCATGG TCGAGCTGCC CATCGCCGTA CCGGTAATCC TCGCCGGCGT GCGCACCGCC GTGGTGATGA ACATCGGCGT CATGACCATT GCCGCCACCA TCGGCGCCGG CGGCCTCGGC GTGCTGATCC TTACCTCCAT CAGCCGCAGC GACATGTCGA TGCTGCTGGT CGGCGCCGTA CTGGTCAGCC TGCTGGCGAT CATCGCCGAC CTGCTGCTGC AAACCCTGCA ACGTGCCCTG ACTCCAGAAG GACTGCGCTC ATGA
|
Protein sequence | MSLLDTFAHL DWAQVLQLTW QHIMLVGIAV GLAILVGVPL GILMTRFPAV AGPLQASATV LLTIPSIALF GLLLPFYSKF GQGLGPLPAI TAVFLYSLLP ILRNTYLALT NVEPGIREAA RGIGMTFGQR LRMVELPIAV PVILAGVRTA VVMNIGVMTI AATIGAGGLG VLILTSISRS DMSMLLVGAV LVSLLAIIAD LLLQTLQRAL TPEGLRS
|
| |