| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0865 |
|---|
| Symbol | |
|---|
| ID | 1044741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 1003492 |
|---|
| End bp | 1003977 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637144260 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | NP_743026 |
|---|
| Protein GI | 26987601 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.622636 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCGGAC ACAAAGGCTT CCTCGACCAC TACCATGAGC TGATCGGCAC CTGGACGCGC
AAGCTGCGCA GTCGTCAGCA GGCCGAGGAC CTCACCCACG ATGCCTTTGT CCGGGTACTG
GAAACCCCGC GCGAGCAGGT TGAGCAGCCA CGCGCCTACC TGCATCAGGC TGCGCGCAAT
ATCGCTGTGG ATGGCTTCCG TCGCGAAGAC CGGCGCCAGG CCCTGGAGCG GGAAGCCTTC
GAAGAAGGCG CAACCGGCAG TGGCGACCCG GAAGCCTACG TGCATGCCCT GGAGCTGGCC
GACAGCGTTG AGCGGGCCCT GGCCGAGCTG CCTCTCAACT GCCGGCAGGT GTTCATCTGG
CAGAAGCTCG AAGGCCTGAC CCAGGCCGAG ATTGCCGAGC GCATGGGGTT GAGCAAGAAC
ATGGTCGAAA AGTATATGAT CCGCACGCTT CGGCACCTGC GTGAGCACCT GGATGTGTCG
GCATGA
|
|---|
| Protein sequence | MSGHKGFLDH YHELIGTWTR KLRSRQQAED LTHDAFVRVL ETPREQVEQP RAYLHQAARN
IAVDGFRRED RRQALEREAF EEGATGSGDP EAYVHALELA DSVERALAEL PLNCRQVFIW
QKLEGLTQAE IAERMGLSKN MVEKYMIRTL RHLREHLDVS A
|
|---|
| |