Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0835 |
Symbol | secD |
ID | 1044695 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 971707 |
End bp | 973569 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637144230 |
Product | preprotein translocase subunit SecD |
Protein accession | NP_742996 |
Protein GI | 26987571 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.707354 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.49969 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAACA AATATCCTCT GTGGAAATAT GCACTGATCG TGCTGGTACT GGTGGTCGGT TTCATTTATT CCGCTCCCAA CCTCTACCCG GATGACCCGG CGGTACAGAT CAGCGGTGCC AGCTCGGCGC TGCAGGTGAA TCAGGCCGAC CTTGATCGCG TCAGCAAGGC GCTGGTCGAT GCCAAGATCG CTGTCAAGGG CGCAAGCCTG GGTGAAAAGG GCAGCGGGCT GATCCGCCTG ACCAATCAGG AAGACCAGCT GCCAGCCAAG GATGTAGTGC GCAAGGCACT GGGCGATGAT TACGTCGTGG CCCTGAACCT GGCCCAGACT ACCCCGCAAT GGCTGCGCAA CCTGGGCGCA AGCCCGATGA AACTGGGCCT GGACCTGTCC GGTGGTGTGC ACTTCCTGCT GGAAGTGGAC ATGGACAAGG CCATGACTGC CCGCATGAAA GTCTACGAAG GCGAGGTCAA GACCTTGCTG CGCAAAGAGC GCGTCCGCTA CCGCAGCCTG CCTCAGCAGG ATGGCGGCAT CATGCTGGGC TTCGCTGACG ATGCCACCCG CGAACAGGCA CGTGCCCTGA TCCGCAAGAA TTTCAATGAT TTCGACCTGA CCACCACCGA TCGCAACGAG CTTGCGGTGC TGCGTCTGGC GCTGACCCAG GCGAAAGTCG CCGAGATCCG CGAATACTCG ATCAAGCAGA ACCTCACCAC CGTGCGCAAC CGCGTGAACG AGCTGGGTGT GGCAGAGCCT CTGGTACAGC GCCAGGGCGC CAACCGTATC GTGGTCGAGC TGCCAGGCGT GCAGGACACT GCCGAAGCCA AGCGTATCCT TGGTAAAACG GCCAACCTGG AGTTCCGCTT CGGTGCCGAA CCGGGTGCAT CCAAGGCCAC TACCGAGGTG TTCGAGTTCC GTGAGGGCGG CCGCTCCGCC GCAGTCGAGC GGGGCCTGAT CATCACGGGT GACCAGGTTA CCGACGCCCA GGCCAGCTTC GACGAGCATG GCCGCCCGCA GGTGAACATT CGCCTGGATG GCCACGGTGG CGAGCTGATG AGCCGTGCTA CCCGTAGCAA CGTCGGCCGT AGCATGGCGG TGATCTTCAT CGAGCAGAAG CCGGTTACCC GCTACGTCAA GCAAGCCGTC GGCGGCGTCG AGAAGGACGT TGCCGTGCAA AGCTTCGTCG AAGAGAAAAA AATCATCAGC CTGGCGACCA TCCAGTCGCC GCTTGGTAGC CAGTTCCGCA TCACCGGCTT GAATGGCCAG GGCGAATCGT CCGAGCTGGC CCTGCTGCTG CGTGCCGGTG GTCTGGCTGC ACCGATGTAC TTCGCTGAAG AACGTACCAT TGGCCCAAGC CTGGGTGCTG ACAACATCAC CAAGGGTATC GATGCGTCGC TGTGGGGCAT GCTGTTCGTC TCGCTGTTCA TCATCGCCAT CTACCGCGCC TTCGGTGTGC TGGCCACCAT CGCCCTGGCG GGCAACATGG TGCTGCTGCT GGCGTTGATG TCGCTGCTGG GGGCGACCCT GACCCTGCCG GGTATTGCCG GCATCGTGTT GACCATGGGT ATGGCGGTGG ACGCCAACGT GCTGATCTTC TCGCGTATTC GCGAAGAGAT CGCGGCTGGT ATGTCGGTGC AGCGCGCCAT CCACGAAGGC TTCAATCGCG CCTACTCGGC AATCGTCGAC GCCAACCTGA CCACCCTGTT GGTCGGCGGC ATCCTGTTTG CCATGGGTAC CGGCCCGGTC AAAGGCTTTG CGGTCACCAT GTCCCTCGGG ATTTTCACCT CGATGTTCAC CGCCGTCATG GTGACCCGTG CATTGGTCAA CCTGACCTGT GGCGGGCGTG ACATCAAGAA GCTGTGGGTT TGA
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Protein sequence | MLNKYPLWKY ALIVLVLVVG FIYSAPNLYP DDPAVQISGA SSALQVNQAD LDRVSKALVD AKIAVKGASL GEKGSGLIRL TNQEDQLPAK DVVRKALGDD YVVALNLAQT TPQWLRNLGA SPMKLGLDLS GGVHFLLEVD MDKAMTARMK VYEGEVKTLL RKERVRYRSL PQQDGGIMLG FADDATREQA RALIRKNFND FDLTTTDRNE LAVLRLALTQ AKVAEIREYS IKQNLTTVRN RVNELGVAEP LVQRQGANRI VVELPGVQDT AEAKRILGKT ANLEFRFGAE PGASKATTEV FEFREGGRSA AVERGLIITG DQVTDAQASF DEHGRPQVNI RLDGHGGELM SRATRSNVGR SMAVIFIEQK PVTRYVKQAV GGVEKDVAVQ SFVEEKKIIS LATIQSPLGS QFRITGLNGQ GESSELALLL RAGGLAAPMY FAEERTIGPS LGADNITKGI DASLWGMLFV SLFIIAIYRA FGVLATIALA GNMVLLLALM SLLGATLTLP GIAGIVLTMG MAVDANVLIF SRIREEIAAG MSVQRAIHEG FNRAYSAIVD ANLTTLLVGG ILFAMGTGPV KGFAVTMSLG IFTSMFTAVM VTRALVNLTC GGRDIKKLWV
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