Gene PP_0835 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0835 
SymbolsecD 
ID1044695 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp971707 
End bp973569 
Gene Length1863 bp 
Protein Length620 aa 
Translation table11 
GC content61% 
IMG OID637144230 
Productpreprotein translocase subunit SecD 
Protein accessionNP_742996 
Protein GI26987571 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.707354 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.49969 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAACA AATATCCTCT GTGGAAATAT GCACTGATCG TGCTGGTACT GGTGGTCGGT 
TTCATTTATT CCGCTCCCAA CCTCTACCCG GATGACCCGG CGGTACAGAT CAGCGGTGCC
AGCTCGGCGC TGCAGGTGAA TCAGGCCGAC CTTGATCGCG TCAGCAAGGC GCTGGTCGAT
GCCAAGATCG CTGTCAAGGG CGCAAGCCTG GGTGAAAAGG GCAGCGGGCT GATCCGCCTG
ACCAATCAGG AAGACCAGCT GCCAGCCAAG GATGTAGTGC GCAAGGCACT GGGCGATGAT
TACGTCGTGG CCCTGAACCT GGCCCAGACT ACCCCGCAAT GGCTGCGCAA CCTGGGCGCA
AGCCCGATGA AACTGGGCCT GGACCTGTCC GGTGGTGTGC ACTTCCTGCT GGAAGTGGAC
ATGGACAAGG CCATGACTGC CCGCATGAAA GTCTACGAAG GCGAGGTCAA GACCTTGCTG
CGCAAAGAGC GCGTCCGCTA CCGCAGCCTG CCTCAGCAGG ATGGCGGCAT CATGCTGGGC
TTCGCTGACG ATGCCACCCG CGAACAGGCA CGTGCCCTGA TCCGCAAGAA TTTCAATGAT
TTCGACCTGA CCACCACCGA TCGCAACGAG CTTGCGGTGC TGCGTCTGGC GCTGACCCAG
GCGAAAGTCG CCGAGATCCG CGAATACTCG ATCAAGCAGA ACCTCACCAC CGTGCGCAAC
CGCGTGAACG AGCTGGGTGT GGCAGAGCCT CTGGTACAGC GCCAGGGCGC CAACCGTATC
GTGGTCGAGC TGCCAGGCGT GCAGGACACT GCCGAAGCCA AGCGTATCCT TGGTAAAACG
GCCAACCTGG AGTTCCGCTT CGGTGCCGAA CCGGGTGCAT CCAAGGCCAC TACCGAGGTG
TTCGAGTTCC GTGAGGGCGG CCGCTCCGCC GCAGTCGAGC GGGGCCTGAT CATCACGGGT
GACCAGGTTA CCGACGCCCA GGCCAGCTTC GACGAGCATG GCCGCCCGCA GGTGAACATT
CGCCTGGATG GCCACGGTGG CGAGCTGATG AGCCGTGCTA CCCGTAGCAA CGTCGGCCGT
AGCATGGCGG TGATCTTCAT CGAGCAGAAG CCGGTTACCC GCTACGTCAA GCAAGCCGTC
GGCGGCGTCG AGAAGGACGT TGCCGTGCAA AGCTTCGTCG AAGAGAAAAA AATCATCAGC
CTGGCGACCA TCCAGTCGCC GCTTGGTAGC CAGTTCCGCA TCACCGGCTT GAATGGCCAG
GGCGAATCGT CCGAGCTGGC CCTGCTGCTG CGTGCCGGTG GTCTGGCTGC ACCGATGTAC
TTCGCTGAAG AACGTACCAT TGGCCCAAGC CTGGGTGCTG ACAACATCAC CAAGGGTATC
GATGCGTCGC TGTGGGGCAT GCTGTTCGTC TCGCTGTTCA TCATCGCCAT CTACCGCGCC
TTCGGTGTGC TGGCCACCAT CGCCCTGGCG GGCAACATGG TGCTGCTGCT GGCGTTGATG
TCGCTGCTGG GGGCGACCCT GACCCTGCCG GGTATTGCCG GCATCGTGTT GACCATGGGT
ATGGCGGTGG ACGCCAACGT GCTGATCTTC TCGCGTATTC GCGAAGAGAT CGCGGCTGGT
ATGTCGGTGC AGCGCGCCAT CCACGAAGGC TTCAATCGCG CCTACTCGGC AATCGTCGAC
GCCAACCTGA CCACCCTGTT GGTCGGCGGC ATCCTGTTTG CCATGGGTAC CGGCCCGGTC
AAAGGCTTTG CGGTCACCAT GTCCCTCGGG ATTTTCACCT CGATGTTCAC CGCCGTCATG
GTGACCCGTG CATTGGTCAA CCTGACCTGT GGCGGGCGTG ACATCAAGAA GCTGTGGGTT
TGA
 
Protein sequence
MLNKYPLWKY ALIVLVLVVG FIYSAPNLYP DDPAVQISGA SSALQVNQAD LDRVSKALVD 
AKIAVKGASL GEKGSGLIRL TNQEDQLPAK DVVRKALGDD YVVALNLAQT TPQWLRNLGA
SPMKLGLDLS GGVHFLLEVD MDKAMTARMK VYEGEVKTLL RKERVRYRSL PQQDGGIMLG
FADDATREQA RALIRKNFND FDLTTTDRNE LAVLRLALTQ AKVAEIREYS IKQNLTTVRN
RVNELGVAEP LVQRQGANRI VVELPGVQDT AEAKRILGKT ANLEFRFGAE PGASKATTEV
FEFREGGRSA AVERGLIITG DQVTDAQASF DEHGRPQVNI RLDGHGGELM SRATRSNVGR
SMAVIFIEQK PVTRYVKQAV GGVEKDVAVQ SFVEEKKIIS LATIQSPLGS QFRITGLNGQ
GESSELALLL RAGGLAAPMY FAEERTIGPS LGADNITKGI DASLWGMLFV SLFIIAIYRA
FGVLATIALA GNMVLLLALM SLLGATLTLP GIAGIVLTMG MAVDANVLIF SRIREEIAAG
MSVQRAIHEG FNRAYSAIVD ANLTTLLVGG ILFAMGTGPV KGFAVTMSLG IFTSMFTAVM
VTRALVNLTC GGRDIKKLWV