| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0709 |
|---|
| Symbol | |
|---|
| ID | 1044540 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 824615 |
|---|
| End bp | 826114 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637144102 |
|---|
| Product | NCS1 nucleoside transporter |
|---|
| Protein accession | NP_742870 |
|---|
| Protein GI | 26987445 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1457] Purine-cytosine permease and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCACT CGACCGGTAT CGAGACCAAC GGCGTCGAAC AGATCCCCGC CGATCAACGC
GACGCCTCCC CGCTAGACCT GTTCCGCCTG ATCTTCGGCG GTGCCAATAC CTTCGCTACC
GCCGTACTGG GCAGCTTCCC GGTGCTTTTC GGGTTGTCAT TCCAGGCGGG TGTGTGGGCG
ATTCTGCTTG GCGTTGGCAT CGGCGCGCTG ATCCTTGCAC CGATGGGGCT GTTTGGCGCG
CTTAACGGCA CCAACAACGC TGTTTCATCG GGCGCGCACT TTGGCGTACA CGGGCGCATC
GTCGGCTCGT TCCTGTCGCT GCTTACGGCG GTGGCGTTTT TCTCGCTCTC GGTGTGGAGC
TCGGGCGATG CGTTGGTCGG TGGTGCCAAG CGCCTGGCCG GCCTGCCAGA GACCGACCTG
ACCCTCGGCC TGGCCTATGG TTTGTTCGCG GTGCTGGTCC TGGTGGTATG CATCTTTGGC
TTCCGCTTCA TGCTGTGGGT CAACAAGATT GCCGTTTGGG CCTCGAGCCT GCTGTTCCTG
CTGGGCATCG TCGCCTTTGC CGGGCCCTTC GATGCCGGCT ACGCAGGCAG CGTCAACCTT
GGCCAGGCAG GCTTCTGGGC TGCGTTCGTC GGCGCGGCGA TCCTGGCCAT GAGCAACCCG
GTGTCGTTTG GCGCCTTCCT GGGTGACTGG TCGCGCTACA TTCCACGCGA AACCCCCAAG
GCACGCATCA TGCTGGCAGT GATCGCGGCA CAGGGGGCGA CGCTGATTCC GTTCCTGTTC
GGCCTGTGTA CGGCCACCTT GGTCGCCACC CAGGCGCCGG ACTACATTGC CGCCAACAAC
TATGTCGGCG GCCTGCTGGC AGTTGCCCCT AGCTGGTTCT TCCTGCCGGT GTGCCTGATT
GCGGTGATCG GCGGCATGTC CACCGGCACC ACCGCGCTGT ATGGCACCGG CCTGGACATG
TCCAGCGTGT TCCCGCGCCT GCTCAGCCGT GCTGGCGCTA CGCTGCTGAT CGGCGTGCTG
GCGATTGGCT TCATCTTCAT TGGCCGCTTC ACCTTCAACC TCGTGCAGAG CGTATCGACC
TTTGCCGTGC TGATCATTAC CTGCACCAGC CCGTGGATGG TGATCATGAT CCTTGGCCTG
ATTACCCGCC GCGGCTTCTA CCACGCCGAC GACCTGCAGG TATTCACCCG CGGCCAGCGT
GGTGGCCACT ACTGGTTCCT GCACGGCTGG AACTGGCGCG GCATGGGGGC GTGGATCCCC
AGCGCGGCGG TTGGCCTGTG CTTCGTCAAC CTGCCGGGGC AGTTCGTCGG CCCACTGGGT
GACCTGGCGG GCGGCATCGA CCTGAGCCTG CCGGTCACGC TGGGGCTGGC TGGCGTGCTG
TACCTGCTGT TGCTCAACCT GTTCCCTGAA CCTGCTGGCG TTTATGGCCC CCTGGGCCCG
CGATGGGTGC GTTGCAAAAG CACCGCGCAT ACGCCTGTGA CCACCGCCGA AATGGCCTGA
|
|---|
| Protein sequence | MSHSTGIETN GVEQIPADQR DASPLDLFRL IFGGANTFAT AVLGSFPVLF GLSFQAGVWA
ILLGVGIGAL ILAPMGLFGA LNGTNNAVSS GAHFGVHGRI VGSFLSLLTA VAFFSLSVWS
SGDALVGGAK RLAGLPETDL TLGLAYGLFA VLVLVVCIFG FRFMLWVNKI AVWASSLLFL
LGIVAFAGPF DAGYAGSVNL GQAGFWAAFV GAAILAMSNP VSFGAFLGDW SRYIPRETPK
ARIMLAVIAA QGATLIPFLF GLCTATLVAT QAPDYIAANN YVGGLLAVAP SWFFLPVCLI
AVIGGMSTGT TALYGTGLDM SSVFPRLLSR AGATLLIGVL AIGFIFIGRF TFNLVQSVST
FAVLIITCTS PWMVIMILGL ITRRGFYHAD DLQVFTRGQR GGHYWFLHGW NWRGMGAWIP
SAAVGLCFVN LPGQFVGPLG DLAGGIDLSL PVTLGLAGVL YLLLLNLFPE PAGVYGPLGP
RWVRCKSTAH TPVTTAEMA
|
|---|
| |