Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0672 |
Symbol | |
ID | 1044496 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 782093 |
End bp | 785923 |
Gene Length | 3831 bp |
Protein Length | 1276 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637144064 |
Product | sensory box protein |
Protein accession | NP_742833 |
Protein GI | 26987408 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.321974 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGACCAACC TTACTCATCC GTCGTCATTG CGTTCCGCCC CACAAGCACC CGCGACTCTC CTGCGCGGGT CGATCAAGGG TGCGCTGGCG CTGCTGGCCC TGATCCTGCT GGGCCTGCTG CTGTGGCAGC TGTTCGCCCA GTTCAATCAT ACCCAGGCCG AATTGCGCAA ACAGAGCCTG GACGCCTCCG CGGAACTGGC CGACCACCTG AGCCTGAACA TGGCGCTCAA GGCGCAACAG GCCGTGAACG TGGTGCAACC CTACCCTGAT GCACCGACAC CTGCCGCCCT GCCCAGCCTG CTCGGTACCC TGCGCGAACG CCTTCCCGCC CTGCAGAGCG TGGCCTGGCT GGACAACGTC GGGCAGCTAC GCGCCGACAG CCTGGCCGGC AGCCCCGACC GCCAGTCACT TGACGAGTTG CTCGTGCTGA GCCAGGGACG CCCGTACTTC TTCACCAATT CGGCCGACAA CCACCTCCTG TACCTGTTGC TGCGCCAGGA TGCCGCACAG GGTAGCGGCT ACTGGCTGCT GCGCCTGTCA CCGGACTATT ACCGCGAGCT CACCCTCCAC CTCGAGGGCA GTGGCCACCC GCAGTGGCTG CTGGAAAACA GCCGCAGCGG CGAGGTGCTG CAGCGCCATG CCGCAGCCGA CACCAGCGAC GAGCCGCTGC AAAGCGTGAT GCTGGCCTTT ATCGAAAACA GCACCTGGCA GCTACGCGGT CTGTTCGACG CCAAACTGGC CCAGCAAAAA TTATTGCCGG CGCTGCTCGG CAAGTGCCTG CTGGTGCTGT TCTGCGCCCT GCTGCCAGTG CTGGCGCTGA TCAACATGCG TCGCCGCCAA CGGGCTCTGC AGGAAGACCG CCGGCGTTAT CAGGAAATTT TTGAAGGCAC CGGCGTTGCC CTGTGCGTGC TCGACCTGTC CAGCCTGCCC GGCCAGCTCG ACCGCTACCA CCTGCGTAAC CGGGCCGCGC TCAAGCACAG CCTGGCGCTG GACCCGAACC TGCGCCGCTC GCTGCTGCTG GAGCTGAAGA TCACCGAGGT CAACCAAGTG GCGCGCCAGC TGCTGAACAT CGACTGCCAC GAAGGTGCCT GGCAGCGGCT GATCGATGGC ACTGGCGACA GCCGAGACAG CGTCGGCATG CAACTGATCG ACGCACTGAT CGAACAACGC CCGTTGCTGG AGCTGGAAGT GCGCCTGCCG ACACCGCAGG GCACCGAGCT GCACCTGTGG CTGATGGCGC GCCTGCCGCT GCAGCGCCGT GATTATCAGG CGGTGATCCT CAGCATCAGC GATATCACCA GCCGCAAACA GGTGGAGCTG TCGCTACTGG AACGCGAAAG TTTCTGGTCG GACGTGGTAC GCACCGTACC CGACCAGTTG TATGTGCAGG ATGTGCCGAG CCAGCGGATG ATCTTCAGCA ACCGCCACCT CGGCCAGACC CTGGGCTACG ACCGCACCGA GCTGGCACAG ATGGGCGACC GCTTCTGGGA GCTGCTGCTG CACCCCGAGG ACGCCGCACA CTACCAGGCA CTGCGCCGCC AACAGCGCGA CAACTGTCAT GACCAACCGC TGCACTGCCA GCTGCGCTTC CGCCACCGCG ACGGAAGCTG GCGCTGCTAC GACATCCGCG AGCAGGTGCT GACCCGCAAC GCCGAAGGCC TGGTGACGCG CATCATCGGT GTGGGCAAGG ATGTGACCGT TCAGATCGAG GCCAGCCAGT CGCTACGTGA CAGCGAGCAA CGCTACCGCA TGCTCGCCGA AAGCATCAGC GACGTGATCT TTTCCACCGA CAACCAGCTC AAGCTCAACT ATGTCAGCCC CTCGGTACAG AGCGTGCTGG GCTACCAGGC CGACTGGATC TTCGCCAACG GCTGGCAGTC GATCGTCGCC AACCCGGCCC AGCTCACTGG CATCTACAGC CTGATGGAGC GTGTCAGCAA GGCCATGGGC GATCCGGCGC AGATGGCGCA ACTGTGCAGC CAGTTACCCA CCCAACTGTT CCTGTTCGAC TGCCTGCGTG CCGATGGCCG CAAGATCCCG ATCGAGCTGC GCCTGGTGCT GGTGTGGGAC GATGACCAGC GCTTCGAAGG CGTACTCGGG GTGGGCCGCG ACATCAGCCA GCAACGTCGT GCCGAAAAAG ACCTGCGCAT GGCCGCGACC GTATTCGAAC ATTCCACGTC GGCGATCCTC ATCACCGACC CGGCCGGCTA TATCGTTCAG GCCAACGAGG CGTTCAGCCG CGTCAGCGGT TACGCCGTCA GTGAAGTGCT CGACCAACTG CCGGGCATGC TCACTGTCGA CGAACAGCAG GAAGGCCACC TGCGCTATGT GGTCAAGCAA CTGCACCAGC GCGGCAGCTG GGAAGGTGAG GTGTGGCTCA AGCGCCGTGA CGGCGACCAC TACCCGGCCT GGGTCGGCAT CACCGCGGTA CTGGACGACG AAGGCGACCT GGCCAGCTAC GTGTGCTTCT TCACCGACAT CAGCGAACGC AAGGCCAGCG AACAGCGCAT CCACCGCCTG GCCTACTACG ACGCCCTTAC CCACCTGCCC AACCGCACAC TGTTCCAGGA CCGTTTGTAC AACGCCCTGC AGCAGGCCGA GCGGCAGAAG GCCTGGGTGG TGCTGATGTT CCTCGACCTC GACCGCTTCA AACCGATCAA CGACTCCCTC GGCCATGCGG CCGGCGACCG CATGCTCAAG GACATGGCCC TGCGCCTGCT GGCCTGCGTG GATGACGACG ACACGGTGGC ACGCATGGGC GGCGACGAGT TCACCCTGTT GCTGCAACCG CGCCCCACCC GTGAAATGGC CCTGAACCGC GCCATCCACG TGGCCGAGAA CATCCTCGGC AGCCTGGTGC GGCCGTTCGT GCTGGAAAAC CGCGAGTTCT TCGTTACCGC CAGCATCGGC ATCGCCCTCA GCCCGCAGGA TGGCAGTGAG CTGAGCCAGC TGATGAAGAA CGCCGACACC GCCATGTACC ACGCCAAGGA GCGCGGCAAG AACAACTTCC AGTTCTACCA GGCCGAAATG AACGCCAGCG CCCTGGAGCG CCTGGAGCTG GAAAGCGACC TGCGCCATGC CATGGAGCAG AACGAATTCA TCCTCTATTA CCAGCCGCAG TTCAGCGGCG ACGGCAAGCG CCTGACCGGC GCCGAAGCGC TGCTGCGCTG GCGTCACCCG ACCCGAGGCC TGGTGCCGCC GGGCGACTTC ATCCCGGTGA TCGAGGAACT GGGCCTGGTG GTGGACGTGG GCGACTGGGT GCTGCGCGAG GCCAGCCGCC AGCTCAAGGC CTGGCACAAG GCCAAGGTGC GGGTGCCGAA AGTGTCGGTG AATATTTCGG CGCGGCAGTT CTCCGACGGC CAGCTAGGCA CGCGGATTGC CAACATCCTG GAAGAAAGCG GCCTGCCGCC GGCATGCCTG GAACTGGAGT TGACTGAAAG CATCCTGATG CGCGAGGTGA ACGAGGCGCT GCAGATTCTT GCCAGCCTGA AGAACCTCGG CCTGAGCATT GCGGTAGACG ACTTCGGCAC CGGCTACTCG TCGCTCAACT ACCTCAAGCA GTTCCCCATC GACGTCCTGA AGATCGACCG GACCTTCGTC GACGGCCTGC CCGAAGGCGA GCAGGACGCG CAGATTGCCC GGGCGATCAT CGCCATGGCC CACAGCCTCA ACCTGGCAGT CATCGCCGAG GGCGTGGAAA CCCACGAACA GCTGGAGTTC CTGCGCGAGC ATGGTTGCGA CGAGGTGCAG GGCTATCTGT TCGGGCGGCC GATGCCAGCG CATCAGTTCG AGGCGCAATT CTCCAACGAG ACCTTGTTCA TGTTCCATTG A
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Protein sequence | MTNLTHPSSL RSAPQAPATL LRGSIKGALA LLALILLGLL LWQLFAQFNH TQAELRKQSL DASAELADHL SLNMALKAQQ AVNVVQPYPD APTPAALPSL LGTLRERLPA LQSVAWLDNV GQLRADSLAG SPDRQSLDEL LVLSQGRPYF FTNSADNHLL YLLLRQDAAQ GSGYWLLRLS PDYYRELTLH LEGSGHPQWL LENSRSGEVL QRHAAADTSD EPLQSVMLAF IENSTWQLRG LFDAKLAQQK LLPALLGKCL LVLFCALLPV LALINMRRRQ RALQEDRRRY QEIFEGTGVA LCVLDLSSLP GQLDRYHLRN RAALKHSLAL DPNLRRSLLL ELKITEVNQV ARQLLNIDCH EGAWQRLIDG TGDSRDSVGM QLIDALIEQR PLLELEVRLP TPQGTELHLW LMARLPLQRR DYQAVILSIS DITSRKQVEL SLLERESFWS DVVRTVPDQL YVQDVPSQRM IFSNRHLGQT LGYDRTELAQ MGDRFWELLL HPEDAAHYQA LRRQQRDNCH DQPLHCQLRF RHRDGSWRCY DIREQVLTRN AEGLVTRIIG VGKDVTVQIE ASQSLRDSEQ RYRMLAESIS DVIFSTDNQL KLNYVSPSVQ SVLGYQADWI FANGWQSIVA NPAQLTGIYS LMERVSKAMG DPAQMAQLCS QLPTQLFLFD CLRADGRKIP IELRLVLVWD DDQRFEGVLG VGRDISQQRR AEKDLRMAAT VFEHSTSAIL ITDPAGYIVQ ANEAFSRVSG YAVSEVLDQL PGMLTVDEQQ EGHLRYVVKQ LHQRGSWEGE VWLKRRDGDH YPAWVGITAV LDDEGDLASY VCFFTDISER KASEQRIHRL AYYDALTHLP NRTLFQDRLY NALQQAERQK AWVVLMFLDL DRFKPINDSL GHAAGDRMLK DMALRLLACV DDDDTVARMG GDEFTLLLQP RPTREMALNR AIHVAENILG SLVRPFVLEN REFFVTASIG IALSPQDGSE LSQLMKNADT AMYHAKERGK NNFQFYQAEM NASALERLEL ESDLRHAMEQ NEFILYYQPQ FSGDGKRLTG AEALLRWRHP TRGLVPPGDF IPVIEELGLV VDVGDWVLRE ASRQLKAWHK AKVRVPKVSV NISARQFSDG QLGTRIANIL EESGLPPACL ELELTESILM REVNEALQIL ASLKNLGLSI AVDDFGTGYS SLNYLKQFPI DVLKIDRTFV DGLPEGEQDA QIARAIIAMA HSLNLAVIAE GVETHEQLEF LREHGCDEVQ GYLFGRPMPA HQFEAQFSNE TLFMFH
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