Gene PP_0672 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0672 
Symbol 
ID1044496 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp782093 
End bp785923 
Gene Length3831 bp 
Protein Length1276 aa 
Translation table11 
GC content64% 
IMG OID637144064 
Productsensory box protein 
Protein accessionNP_742833 
Protein GI26987408 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.321974 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACCAACC TTACTCATCC GTCGTCATTG CGTTCCGCCC CACAAGCACC CGCGACTCTC 
CTGCGCGGGT CGATCAAGGG TGCGCTGGCG CTGCTGGCCC TGATCCTGCT GGGCCTGCTG
CTGTGGCAGC TGTTCGCCCA GTTCAATCAT ACCCAGGCCG AATTGCGCAA ACAGAGCCTG
GACGCCTCCG CGGAACTGGC CGACCACCTG AGCCTGAACA TGGCGCTCAA GGCGCAACAG
GCCGTGAACG TGGTGCAACC CTACCCTGAT GCACCGACAC CTGCCGCCCT GCCCAGCCTG
CTCGGTACCC TGCGCGAACG CCTTCCCGCC CTGCAGAGCG TGGCCTGGCT GGACAACGTC
GGGCAGCTAC GCGCCGACAG CCTGGCCGGC AGCCCCGACC GCCAGTCACT TGACGAGTTG
CTCGTGCTGA GCCAGGGACG CCCGTACTTC TTCACCAATT CGGCCGACAA CCACCTCCTG
TACCTGTTGC TGCGCCAGGA TGCCGCACAG GGTAGCGGCT ACTGGCTGCT GCGCCTGTCA
CCGGACTATT ACCGCGAGCT CACCCTCCAC CTCGAGGGCA GTGGCCACCC GCAGTGGCTG
CTGGAAAACA GCCGCAGCGG CGAGGTGCTG CAGCGCCATG CCGCAGCCGA CACCAGCGAC
GAGCCGCTGC AAAGCGTGAT GCTGGCCTTT ATCGAAAACA GCACCTGGCA GCTACGCGGT
CTGTTCGACG CCAAACTGGC CCAGCAAAAA TTATTGCCGG CGCTGCTCGG CAAGTGCCTG
CTGGTGCTGT TCTGCGCCCT GCTGCCAGTG CTGGCGCTGA TCAACATGCG TCGCCGCCAA
CGGGCTCTGC AGGAAGACCG CCGGCGTTAT CAGGAAATTT TTGAAGGCAC CGGCGTTGCC
CTGTGCGTGC TCGACCTGTC CAGCCTGCCC GGCCAGCTCG ACCGCTACCA CCTGCGTAAC
CGGGCCGCGC TCAAGCACAG CCTGGCGCTG GACCCGAACC TGCGCCGCTC GCTGCTGCTG
GAGCTGAAGA TCACCGAGGT CAACCAAGTG GCGCGCCAGC TGCTGAACAT CGACTGCCAC
GAAGGTGCCT GGCAGCGGCT GATCGATGGC ACTGGCGACA GCCGAGACAG CGTCGGCATG
CAACTGATCG ACGCACTGAT CGAACAACGC CCGTTGCTGG AGCTGGAAGT GCGCCTGCCG
ACACCGCAGG GCACCGAGCT GCACCTGTGG CTGATGGCGC GCCTGCCGCT GCAGCGCCGT
GATTATCAGG CGGTGATCCT CAGCATCAGC GATATCACCA GCCGCAAACA GGTGGAGCTG
TCGCTACTGG AACGCGAAAG TTTCTGGTCG GACGTGGTAC GCACCGTACC CGACCAGTTG
TATGTGCAGG ATGTGCCGAG CCAGCGGATG ATCTTCAGCA ACCGCCACCT CGGCCAGACC
CTGGGCTACG ACCGCACCGA GCTGGCACAG ATGGGCGACC GCTTCTGGGA GCTGCTGCTG
CACCCCGAGG ACGCCGCACA CTACCAGGCA CTGCGCCGCC AACAGCGCGA CAACTGTCAT
GACCAACCGC TGCACTGCCA GCTGCGCTTC CGCCACCGCG ACGGAAGCTG GCGCTGCTAC
GACATCCGCG AGCAGGTGCT GACCCGCAAC GCCGAAGGCC TGGTGACGCG CATCATCGGT
GTGGGCAAGG ATGTGACCGT TCAGATCGAG GCCAGCCAGT CGCTACGTGA CAGCGAGCAA
CGCTACCGCA TGCTCGCCGA AAGCATCAGC GACGTGATCT TTTCCACCGA CAACCAGCTC
AAGCTCAACT ATGTCAGCCC CTCGGTACAG AGCGTGCTGG GCTACCAGGC CGACTGGATC
TTCGCCAACG GCTGGCAGTC GATCGTCGCC AACCCGGCCC AGCTCACTGG CATCTACAGC
CTGATGGAGC GTGTCAGCAA GGCCATGGGC GATCCGGCGC AGATGGCGCA ACTGTGCAGC
CAGTTACCCA CCCAACTGTT CCTGTTCGAC TGCCTGCGTG CCGATGGCCG CAAGATCCCG
ATCGAGCTGC GCCTGGTGCT GGTGTGGGAC GATGACCAGC GCTTCGAAGG CGTACTCGGG
GTGGGCCGCG ACATCAGCCA GCAACGTCGT GCCGAAAAAG ACCTGCGCAT GGCCGCGACC
GTATTCGAAC ATTCCACGTC GGCGATCCTC ATCACCGACC CGGCCGGCTA TATCGTTCAG
GCCAACGAGG CGTTCAGCCG CGTCAGCGGT TACGCCGTCA GTGAAGTGCT CGACCAACTG
CCGGGCATGC TCACTGTCGA CGAACAGCAG GAAGGCCACC TGCGCTATGT GGTCAAGCAA
CTGCACCAGC GCGGCAGCTG GGAAGGTGAG GTGTGGCTCA AGCGCCGTGA CGGCGACCAC
TACCCGGCCT GGGTCGGCAT CACCGCGGTA CTGGACGACG AAGGCGACCT GGCCAGCTAC
GTGTGCTTCT TCACCGACAT CAGCGAACGC AAGGCCAGCG AACAGCGCAT CCACCGCCTG
GCCTACTACG ACGCCCTTAC CCACCTGCCC AACCGCACAC TGTTCCAGGA CCGTTTGTAC
AACGCCCTGC AGCAGGCCGA GCGGCAGAAG GCCTGGGTGG TGCTGATGTT CCTCGACCTC
GACCGCTTCA AACCGATCAA CGACTCCCTC GGCCATGCGG CCGGCGACCG CATGCTCAAG
GACATGGCCC TGCGCCTGCT GGCCTGCGTG GATGACGACG ACACGGTGGC ACGCATGGGC
GGCGACGAGT TCACCCTGTT GCTGCAACCG CGCCCCACCC GTGAAATGGC CCTGAACCGC
GCCATCCACG TGGCCGAGAA CATCCTCGGC AGCCTGGTGC GGCCGTTCGT GCTGGAAAAC
CGCGAGTTCT TCGTTACCGC CAGCATCGGC ATCGCCCTCA GCCCGCAGGA TGGCAGTGAG
CTGAGCCAGC TGATGAAGAA CGCCGACACC GCCATGTACC ACGCCAAGGA GCGCGGCAAG
AACAACTTCC AGTTCTACCA GGCCGAAATG AACGCCAGCG CCCTGGAGCG CCTGGAGCTG
GAAAGCGACC TGCGCCATGC CATGGAGCAG AACGAATTCA TCCTCTATTA CCAGCCGCAG
TTCAGCGGCG ACGGCAAGCG CCTGACCGGC GCCGAAGCGC TGCTGCGCTG GCGTCACCCG
ACCCGAGGCC TGGTGCCGCC GGGCGACTTC ATCCCGGTGA TCGAGGAACT GGGCCTGGTG
GTGGACGTGG GCGACTGGGT GCTGCGCGAG GCCAGCCGCC AGCTCAAGGC CTGGCACAAG
GCCAAGGTGC GGGTGCCGAA AGTGTCGGTG AATATTTCGG CGCGGCAGTT CTCCGACGGC
CAGCTAGGCA CGCGGATTGC CAACATCCTG GAAGAAAGCG GCCTGCCGCC GGCATGCCTG
GAACTGGAGT TGACTGAAAG CATCCTGATG CGCGAGGTGA ACGAGGCGCT GCAGATTCTT
GCCAGCCTGA AGAACCTCGG CCTGAGCATT GCGGTAGACG ACTTCGGCAC CGGCTACTCG
TCGCTCAACT ACCTCAAGCA GTTCCCCATC GACGTCCTGA AGATCGACCG GACCTTCGTC
GACGGCCTGC CCGAAGGCGA GCAGGACGCG CAGATTGCCC GGGCGATCAT CGCCATGGCC
CACAGCCTCA ACCTGGCAGT CATCGCCGAG GGCGTGGAAA CCCACGAACA GCTGGAGTTC
CTGCGCGAGC ATGGTTGCGA CGAGGTGCAG GGCTATCTGT TCGGGCGGCC GATGCCAGCG
CATCAGTTCG AGGCGCAATT CTCCAACGAG ACCTTGTTCA TGTTCCATTG A
 
Protein sequence
MTNLTHPSSL RSAPQAPATL LRGSIKGALA LLALILLGLL LWQLFAQFNH TQAELRKQSL 
DASAELADHL SLNMALKAQQ AVNVVQPYPD APTPAALPSL LGTLRERLPA LQSVAWLDNV
GQLRADSLAG SPDRQSLDEL LVLSQGRPYF FTNSADNHLL YLLLRQDAAQ GSGYWLLRLS
PDYYRELTLH LEGSGHPQWL LENSRSGEVL QRHAAADTSD EPLQSVMLAF IENSTWQLRG
LFDAKLAQQK LLPALLGKCL LVLFCALLPV LALINMRRRQ RALQEDRRRY QEIFEGTGVA
LCVLDLSSLP GQLDRYHLRN RAALKHSLAL DPNLRRSLLL ELKITEVNQV ARQLLNIDCH
EGAWQRLIDG TGDSRDSVGM QLIDALIEQR PLLELEVRLP TPQGTELHLW LMARLPLQRR
DYQAVILSIS DITSRKQVEL SLLERESFWS DVVRTVPDQL YVQDVPSQRM IFSNRHLGQT
LGYDRTELAQ MGDRFWELLL HPEDAAHYQA LRRQQRDNCH DQPLHCQLRF RHRDGSWRCY
DIREQVLTRN AEGLVTRIIG VGKDVTVQIE ASQSLRDSEQ RYRMLAESIS DVIFSTDNQL
KLNYVSPSVQ SVLGYQADWI FANGWQSIVA NPAQLTGIYS LMERVSKAMG DPAQMAQLCS
QLPTQLFLFD CLRADGRKIP IELRLVLVWD DDQRFEGVLG VGRDISQQRR AEKDLRMAAT
VFEHSTSAIL ITDPAGYIVQ ANEAFSRVSG YAVSEVLDQL PGMLTVDEQQ EGHLRYVVKQ
LHQRGSWEGE VWLKRRDGDH YPAWVGITAV LDDEGDLASY VCFFTDISER KASEQRIHRL
AYYDALTHLP NRTLFQDRLY NALQQAERQK AWVVLMFLDL DRFKPINDSL GHAAGDRMLK
DMALRLLACV DDDDTVARMG GDEFTLLLQP RPTREMALNR AIHVAENILG SLVRPFVLEN
REFFVTASIG IALSPQDGSE LSQLMKNADT AMYHAKERGK NNFQFYQAEM NASALERLEL
ESDLRHAMEQ NEFILYYQPQ FSGDGKRLTG AEALLRWRHP TRGLVPPGDF IPVIEELGLV
VDVGDWVLRE ASRQLKAWHK AKVRVPKVSV NISARQFSDG QLGTRIANIL EESGLPPACL
ELELTESILM REVNEALQIL ASLKNLGLSI AVDDFGTGYS SLNYLKQFPI DVLKIDRTFV
DGLPEGEQDA QIARAIIAMA HSLNLAVIAE GVETHEQLEF LREHGCDEVQ GYLFGRPMPA
HQFEAQFSNE TLFMFH