Gene PP_0550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0550 
Symbol 
ID1044334 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp638142 
End bp638786 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content64% 
IMG OID637143933 
Producthypothetical protein 
Protein accessionNP_742713 
Protein GI26987288 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0702] Predicted nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.440195 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACTTGA CGCCTCAGCA TGTCCTGCTT GCCGGAGCCA CCGGTCTGAC CGGTGAACAC 
CTGCTAGACC GCCTGCTCAA CGAGCCCACC ATCACCCGTG TCCTGGCGCC TACACGCCGG
CCATTGGCCG AGCACCCGCA CCTGGAAAAC CCGGTGGGCG ACCCGGCGGT ATTCCTTCCG
CAACTGGCCG GGCGGGTCGA CATCGCCTAC TGCTGCCTGG GCACCACGCT GAAGCAGGCG
GGTTCCGAAT CGGCTTTCCG CGCAGTGGAT CTGGACATGG TGGTCGCCTT CAGCAAGCGT
GCCCGGGAAA TGGGCGCACG GCATCTGCTG GTGATCAGTG CAGTGGGCGC CGACCCTAAG
TCGTCAATTT TCTATAACCG GGTCAAGGGC GAGATGGAAG AAGCGCTCAA GGCTCAGGAC
TGGCCACAGC TGACCATCGT GCGGCCCTCG TTCCTGCTGG GCGAGCGACT GGAGCCACGG
CTGACTGAAC AGCTAGTTGC GCCGTTTTCT CGGTTCATAC CCGGGAAATA CCGGGGAATC
GAGGCTTGTA CCCTGGCGCG GGCGCTGTGG CGGCTGGCGC TGGAGGAAGA AGACGGCGTG
CGGGTTGTGG AGTCGGATGA ATTGCGCAGG TTGGGCAGGA TCTAG
 
Protein sequence
MYLTPQHVLL AGATGLTGEH LLDRLLNEPT ITRVLAPTRR PLAEHPHLEN PVGDPAVFLP 
QLAGRVDIAY CCLGTTLKQA GSESAFRAVD LDMVVAFSKR AREMGARHLL VISAVGADPK
SSIFYNRVKG EMEEALKAQD WPQLTIVRPS FLLGERLEPR LTEQLVAPFS RFIPGKYRGI
EACTLARALW RLALEEEDGV RVVESDELRR LGRI