Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0540 |
Symbol | |
ID | 1044320 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 626543 |
End bp | 627190 |
Gene Length | 648 bp |
Protein Length | 215 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637143923 |
Product | SNARE associated Golgi protein |
Protein accession | NP_742703 |
Protein GI | 26987278 |
COG category | [S] Function unknown |
COG ID | [COG0586] Uncharacterized membrane-associated protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTTCA ACCCGCTGGA CCTTATCCTG CATCTCGATG CCTACCTCGA TCTGCTGGTC ACCAATTACG GTCCCTGGAT CTACGCCATC CTGTTCACCG TGATCTTCTG CGAAACCGGC CTGGTAGTGA TGCCATTCCT GCCGGGCGAC TCGTTGCTGT TCATCGCCGG CGCCGTTGCG GCGGGTGGCG GCATGGACCC GGTACTGCTG GCCGGCCTGC TGATGGCCGC TGCAATCCTG GGCGACAGCA CCAATTACGT GATAGGCCGA ACAGCCGGCG AGCGCTTGTT CAACAACCCC AACTCCAAGA TCTTCCGCCG CGACTACCTG CAACGTACCC ACGATTTCTA TGAACGCCAT GGCGGCAAGA CCGTGACCAT GGCGCGCTTC CTGCCCATCT TGCGCACCTT CGCACCGTTC GTCGCGGGCA TTGCCCACAT GCACTACCCA CGCTTCCTCG GCTTCAGCGT TGCCGGTTCG CTGCTTTGGG TCGGCGGCCT GGTCACCTTG GGCTACTTCT TCGGCAACGT GCCATTCATC AAGCAGCACC TGTCGCTGAT GGTGGTGGGC ATCATCATCC TGTCGCTGGT GCCGATGATT CTCGGCTTGC TGCGTGGGCG CCTGGGCCGT ACGGCCAAGG CTCACTGA
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Protein sequence | MDFNPLDLIL HLDAYLDLLV TNYGPWIYAI LFTVIFCETG LVVMPFLPGD SLLFIAGAVA AGGGMDPVLL AGLLMAAAIL GDSTNYVIGR TAGERLFNNP NSKIFRRDYL QRTHDFYERH GGKTVTMARF LPILRTFAPF VAGIAHMHYP RFLGFSVAGS LLWVGGLVTL GYFFGNVPFI KQHLSLMVVG IIILSLVPMI LGLLRGRLGR TAKAH
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