| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0486 |
|---|
| Symbol | |
|---|
| ID | 1044256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 571663 |
|---|
| End bp | 573087 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637143872 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | NP_742652 |
|---|
| Protein GI | 26987227 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0484515 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAGGCT TTCGCGCTCT TGCAAAACCT GGTGCCATCT CCATGTGGGT CCCCCAATAC
AGCCATCAAA CACAGCCGGT TTACCTGATG ATCGCTGATG CCCTTGAACA GGACATCGAA
AGTGGTCGGC TTGCAGAAGG CGATCGCTTA CCCACGCTCA AGGACCTGGC CGAGGCGCTG
AATGTAACCC CCGGCACGGT TGGCAGGGCC TACGACGAAG CAGCCAAGCG TGGTCTGGTG
GCTGGCGAGG TAGGCCGAGG CACATTTGTC AGGCAGCTGC GGCAGCCATT ACCCGCCCCG
TCGGTGCCCA CACCCGTTGC CGGCGAGAGT AGCCAGATCG ACCTCTCGAT CATCAAGCCC
AACGACGCTC ACATGAGCGA GTGGCTAGGC ACGGCTATCA GCGAACTGGC CGCCTCATCG
GACTTGGGGC AGGTACTCGA CTATGTGACA GAGGGTGGTC ACACGTCCCA CAAACAAGCC
GGTGCGACCT GGATACAGCG CTGGCTGCCT GATGCTCGCT GGCAGCAGGT AGTACTGACC
GCTGGCGCCC AACATGGGCT GCTGGTGGCC ATCAGCAGCC TGTCGAAGAG TGACGATGTG
GTGCTGTGCG AGTCGCTCTG CTACCCGGGC ATCATATCCC TGGCCCACAG CCTGGGCCGG
CGCCTGCGCG GCGTCGCCAT GGACGAACAC GGGCTCATCC CGGAGGCATT GCGCGCGGCC
TGCCTGGAAC ACCGCCCTTC CCTGCTGGTG TGCGTCACCA CGCACCAAAA CCCGACCAAC
TCGATCATGC CCCCAGCAAG GCGCCAGGCT ATCGCCGAGA TCGCCCGTGA GTTCGACCTG
TTCATCGTGG ATGACGATAT CTACGGTTTT CTCGAGCCCA GCCCGGACTA CAAGCCGCTT
GCAGCGTATG CGCCTGAACG CTCGGTATAC CTCACCAGCC TGTCCAAAAG CGTGCTGCCG
GCGCTGCGCA TCGGCTACCT GTACGCCCCG CCGCAAACCC TGTCGCGGTT ATCATCGATG
GTACGCAGCA GCGTGTGGAT GCCATCGCCT CTGATGGCGC AATTGGCCAG TAACCTGATC
AACAGCGGCA AGGCCGACCA GTTGGTGCGT ATGCAGCAGC AGGAGGCGGC CGCGCGCCAG
CACATGGCCC GGGAGATTCT TGGCCAATAC AAGATCCGCA GTCAGCCCCA CAGCTTCCAT
ATCTGGCTGG AGCTGCCAGA ACCGTGGACC AGCGACGAGT TTGCCAACCT GGCGCGTGAC
AACGGCGTAA CGGTGGTCAG CGGCAGCCAG TTCCTGCCTG AACGCAGCCA CGCCACCAGC
GGTGTGCGCA TCGCCCTGAT GGCACCCAGC CGCCAAGAAC TGGGCTTTGC CCTGACCAAG
CTGGCAAGCC TGCTGGATTC GCCGGAGCCC CGGTTGTTCT ACTGA
|
|---|
| Protein sequence | MLGFRALAKP GAISMWVPQY SHQTQPVYLM IADALEQDIE SGRLAEGDRL PTLKDLAEAL
NVTPGTVGRA YDEAAKRGLV AGEVGRGTFV RQLRQPLPAP SVPTPVAGES SQIDLSIIKP
NDAHMSEWLG TAISELAASS DLGQVLDYVT EGGHTSHKQA GATWIQRWLP DARWQQVVLT
AGAQHGLLVA ISSLSKSDDV VLCESLCYPG IISLAHSLGR RLRGVAMDEH GLIPEALRAA
CLEHRPSLLV CVTTHQNPTN SIMPPARRQA IAEIAREFDL FIVDDDIYGF LEPSPDYKPL
AAYAPERSVY LTSLSKSVLP ALRIGYLYAP PQTLSRLSSM VRSSVWMPSP LMAQLASNLI
NSGKADQLVR MQQQEAAARQ HMAREILGQY KIRSQPHSFH IWLELPEPWT SDEFANLARD
NGVTVVSGSQ FLPERSHATS GVRIALMAPS RQELGFALTK LASLLDSPEP RLFY
|
|---|
| |