| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0479 |
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| Symbol | rpoA |
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| ID | 1044246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 562916 |
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| End bp | 563917 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637143865 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | NP_742645 |
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| Protein GI | 26987220 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000304739 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGATTT CGGTAAATGA GTTCCTGACT CCCCGCCACA TTGATGTGCA GGTAGTCAGT
CCGACCCGCG CCAAAATTAC GCTCGAGCCT CTCGAGCGTG GTTTCGGCCA TACCCTGGGC
AACGCGCTGC GCCGCATCCT GTTGTCCTCC ATGCCTGGCT GTGCAGTAGT CGAGGCCGAG
ATCGATGGCG TACTCCATGA GTACTCCGCG ATCGAAGGTG TTCAGGAAGA CGTAATTGAA
ATCCTGTTGA ACCTGAAAGG TCTCGCTATC AAACTGCATG GTCGTGACGA AGTTACGCTG
ACCTTGTCGA AAAAGGGTTC GGGGGTGGTT ACCGCTGCCG ATATTCAGCT GGATCACGAT
GTCGAGATCG TCAACCCCGA TCACGTAATC GCGAACCTGG CGTCGAACGG CGCTCTGAAC
ATGAAGCTCA CTGTAGCTCG TGGTCGTGGT TACGAGCCGG CCGACTCCCG TCAAACCGAC
GAAGACGAAA GCCGTAGCAT TGGCCGTCTG CAGTTGGACG CCTCCTTCAG CCCGGTGCGT
CGTATCGCCT ATGTGGTCGA GAACGCCCGT GTTGAACAGC GTACCAACCT GGACAAACTG
GTCATTGATC TGGAAACCAA CGGCACCCTG GATCCTGAAG AGGCTATCCG CCGCGCTGCG
ACCATTCTGC AACAGCAGTT GGCCGCGTTC GTCGACCTCA AAGGTGACAG CGAGCCTGTC
GTAGTCGAGC AGGAAGACGA GATCGATCCG ATCCTGCTGC GTCCGGTTGA CGACCTGGAA
CTGACTGTAC GTTCGGCCAA CTGCCTCAAG GCGGAGAACA TCTACTACAT CGGCGACCTG
ATTCAGCGTA CCGAAGTAGA GCTGTTGAAG ACTCCTAACC TGGGTAAGAA GTCCCTGACT
GAAATCAAGG ACGTTCTGGC CTCTCGTGGT CTGTCTCTCG GCATGCGCCT CGACAACTGG
CCGCCTGCAA GTCTTAAGAA AGACGACAAG GCGACCGCCT GA
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| Protein sequence | MQISVNEFLT PRHIDVQVVS PTRAKITLEP LERGFGHTLG NALRRILLSS MPGCAVVEAE
IDGVLHEYSA IEGVQEDVIE ILLNLKGLAI KLHGRDEVTL TLSKKGSGVV TAADIQLDHD
VEIVNPDHVI ANLASNGALN MKLTVARGRG YEPADSRQTD EDESRSIGRL QLDASFSPVR
RIAYVVENAR VEQRTNLDKL VIDLETNGTL DPEEAIRRAA TILQQQLAAF VDLKGDSEPV
VVEQEDEIDP ILLRPVDDLE LTVRSANCLK AENIYYIGDL IQRTEVELLK TPNLGKKSLT
EIKDVLASRG LSLGMRLDNW PPASLKKDDK ATA
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