| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0474 |
|---|
| Symbol | secY |
|---|
| ID | 1044239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 559885 |
|---|
| End bp | 561216 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637143860 |
|---|
| Product | preprotein translocase subunit SecY |
|---|
| Protein accession | NP_742640 |
|---|
| Protein GI | 26987215 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0201] Preprotein translocase subunit SecY |
|---|
| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.733359 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000433507 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGC AAGGTGCTCT CTCTTCGCTC GGTAAGGGCG GGATGTCGGA ACTCTGGGCT
CGTCTGCGCT TTCTGTTCAT GGCGATCATC GTCTATCGGA TAGGTGCGCA TATCCCGGTT
CCCGGCATCA ATCCGGACCG TCTGGCGGAT CTGTTTCGGC AGAATGAGGG GACCATTCTT
AGCTTGTTCA ACATGTTTTC CGGTGGCGCG CTCGAGCGCA TGAGCATCTT TGCACTGGGG
ATCATGCCGT ACATTTCGGC ATCGATCATC ATGCAGTTGA TGACGGCGGT CAGCCCGCAA
CTGGAGCAGT TGAAGAAGGA AGGTGAAGCT GGCCGTCGCA AGATCAGCCA GTACACCCGC
TACGGCACCG TTATCCTGGC ACTGGTCCAA GCCATTGGCA TGTCCATTGG CCTGGCCAAC
CAGGGCGTGG CGTTTTCTGT AGGCCTGGGC TTCCATATCG TCGCTGTTTC CACTTTCGTG
GCAGGCGCGA TGTTCATGAT GTGGCTGGGC GAGCAGATCA CCGAGCGCGG TGTGGGCAAC
GGTATCTCGA TGTTGATTTT CGCGGGTATC GTTGCCGGTC TTCCGAGAGC AATCGGGCAG
TCTTTCGAGT CTGCACGCAC AGGCGATATC AACATTTTCG CCCTGGTCGC CATCGGTCTG
CTGGCAGTAG CGATTATCGG TTTTGTGGTG TTCATTGAGC GTGGTCAGCG TCGTATCGCC
GTTCATTACG CCAAGCGTCA GCAGGGCCGT AAGGTCTTCG CTGCGCAGAC TAGCCACTTG
CCGCTGAAAG TGAACATGGC GGGGGTTATC CCGGCTATTT TCGCGAGCAG CATTCTGCTG
TTCCCGGCTT CGCTGGGTGC CTGGTTTGGT CAGTCCGAAG GTATGGGCTG GCTGCAGGAC
ATCTCGCAGT CGATCGCTCC TGGTCAGCCG TTGAACATTC TGCTGTTTAG TGCAGGGATC
ATTTTCTTCT GCTTCTTCTA CACAGCGTTG ATGTTCAACC CGAAAGACGT AGCGGAAAAC
CTGAAGAAGT CCGGTGCCTT TATTCCGGGT ATCCGTCCTG GTGAGCAGTC GGCACGCTAC
ATTGATGGCG TTCTGACCCG TTTGACCATG TTCGGTGCTC TTTACATGAT GGCCGTCTGC
CTTCTGCCCC AGTTCCTGGT GGTGGCAGCA AATGTGCCGT TCTACCTTGG CGGGACCTCG
TTGCTGATTG TGGTAGTGGT TGTGATGGAC TTCATGTCCC AAGTACAATC GCACCTCGTT
TCGCACCAGT ACGAATCCCT GATGAAGAAA GCCAACCTGA AAGGCTACGG TGGCAGCGGT
TTGCTGCGCT GA
|
|---|
| Protein sequence | MAKQGALSSL GKGGMSELWA RLRFLFMAII VYRIGAHIPV PGINPDRLAD LFRQNEGTIL
SLFNMFSGGA LERMSIFALG IMPYISASII MQLMTAVSPQ LEQLKKEGEA GRRKISQYTR
YGTVILALVQ AIGMSIGLAN QGVAFSVGLG FHIVAVSTFV AGAMFMMWLG EQITERGVGN
GISMLIFAGI VAGLPRAIGQ SFESARTGDI NIFALVAIGL LAVAIIGFVV FIERGQRRIA
VHYAKRQQGR KVFAAQTSHL PLKVNMAGVI PAIFASSILL FPASLGAWFG QSEGMGWLQD
ISQSIAPGQP LNILLFSAGI IFFCFFYTAL MFNPKDVAEN LKKSGAFIPG IRPGEQSARY
IDGVLTRLTM FGALYMMAVC LLPQFLVVAA NVPFYLGGTS LLIVVVVVMD FMSQVQSHLV
SHQYESLMKK ANLKGYGGSG LLR
|
|---|
| |