Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0466 |
Symbol | rplE |
ID | 1044223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 556397 |
End bp | 556936 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637143852 |
Product | 50S ribosomal protein L5 |
Protein accession | NP_742632 |
Protein GI | 26987207 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0094] Ribosomal protein L5 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.224995 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.00000317372 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCACGAC TGAAAGAGAT TTACCGGAAC GAAATCGCTC CTAAGCTTAA GGAAGAACTT AAGCTGTCGA ACGTGATGGA AGTTCCGCGC GTTACCAAGA TCACCCTGAA CATGGGTCTG GGCGAAGCGA TCGGCGACAA GAAAGTCATC GAGCACGCTG TTGCTGACCT GGAAAAGATC ACCGGTCAAA AGCCGGTCGT GACTTTCGCT CGCAAATCCA TCGCTGGCTT CAAAGTCCGC GAAGGCTGGC CGATCGGCGT CAAGGTGACC CTGCGTAGCG ACAAGATGTA CGAATTCCTG GACCGCCTGC TGGCGATCTC CCTGCCTCGG GTTCGCGACT TCCGCGGCCT GAATGCCAAG TCCTTCGATG GTCGTGGCAA CTACAGCATG GGCGTGAAAG AGCAGATCAT CTTCCCGGAA ATCGACTACG ACAAGATCGA TGCTCTGCGC GGTTTGGACA TCACCCTGAC CACCACTGCT CGTTCGGACG ACGAAGGCCG CGCTCTGCTG CGTGCTTTCA AGTTCCCGTT CCGCAACTGA
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Protein sequence | MARLKEIYRN EIAPKLKEEL KLSNVMEVPR VTKITLNMGL GEAIGDKKVI EHAVADLEKI TGQKPVVTFA RKSIAGFKVR EGWPIGVKVT LRSDKMYEFL DRLLAISLPR VRDFRGLNAK SFDGRGNYSM GVKEQIIFPE IDYDKIDALR GLDITLTTTA RSDDEGRALL RAFKFPFRN
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