Gene PP_0460 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0460 
SymbolrpsC 
ID1044209 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp554086 
End bp554772 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content54% 
IMG OID637143846 
Product30S ribosomal protein S3 
Protein accessionNP_742626 
Protein GI161378146 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0092] Ribosomal protein S3 
TIGRFAM ID[TIGR01009] ribosomal protein S3, bacterial type 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.521801 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000018203 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGGTCAGA AAGTACATCC CACTGGCATT CGCCTGGGAA TCGTCAAGGA GCACACCTCC 
GTCTGGTACG CAGACGGTGC TACTTACGCA GATTACCTGT TGAAGGATCT GAAAACGCGT
GAGTACCTCC AAGACAAACT AAAAAGCGCG TCCGTAAGCC GTATCGATAT TCATCGTCCG
GCTCAAACTG CACGCATCAC CATCCACACC GCTCGTCCCG GTATCGTTAT CGGTAAGAAA
GGTGAAGATG TCGAGAAGCT GCGTCAGGAC CTGACCAAGC AGATGGGTGT GCCTGTGCAC
ATCAACATCG AAGAGATCCG CAAGCCGGAA CTCGACGCTA TGCTGGTTGC GCAGAGCGTA
GCTCAGCAGC TGGAACGCCG TGTAATGTTC CGTCGCGCCA TGAAGCGTGC GGTACAGAAC
GCCATGCGTA TTGGTGCCAA GGGCATCAAG ATCCAGGTGA GCGGTCGTCT CGGCGGTGCT
GAGATTGCTC GTACCGAGTG GTATCGCGAA GGTCGTGTGC CTCTGCACAC CCTGCGTGCC
GATATCGACT ACAACACCTA CGAAGCTCAC ACCACTTACG GTGTGATCGG TGTGAAGGTT
TGGATCTTCA AAGGCGAAGT TATTGGTGGT CGCCAAGAAG AACTGAAACC ACAAGCACCA
GCGCCTCGTA AAAAAGCTGC TAAGTAA
 
Protein sequence
MGQKVHPTGI RLGIVKEHTS VWYADGATYA DYLLKDLKTR EYLQDKLKSA SVSRIDIHRP 
AQTARITIHT ARPGIVIGKK GEDVEKLRQD LTKQMGVPVH INIEEIRKPE LDAMLVAQSV
AQQLERRVMF RRAMKRAVQN AMRIGAKGIK IQVSGRLGGA EIARTEWYRE GRVPLHTLRA
DIDYNTYEAH TTYGVIGVKV WIFKGEVIGG RQEELKPQAP APRKKAAK