Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0454 |
Symbol | rplC |
ID | 1044200 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 551051 |
End bp | 551686 |
Gene Length | 636 bp |
Protein Length | 211 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637143840 |
Product | 50S ribosomal protein L3 |
Protein accession | NP_742620 |
Protein GI | 161378147 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0087] Ribosomal protein L3 |
TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00952841 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000209689 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGACTATTG GTGTAATCGG TCGCAAGTGC GGTATGACCC GCATTTTCAC CGAAGAAGGT GTCTCCATTC CGGTCACGGT CATTGAGATC GAGCCGAATC GCGTCACCCA GTTCAAAACT GAAGAAACCG ATGGCTACCG TGCAGTGCAA GTCACTGTCG GCGAGCGTCG TGCTTCGCGT GTGACTGCCG CTCAGGCAGG CCACTTCGCC AAGGCCAACG TTGCCGCTGG TCGCGGTGTT TGGGAGTTCC GTCTTGAAGA AGGCGATTTC CAGGCTGGCG ATCTGATCAA AGCTGAACTC TTCACTGCAG GCCAGCTGGT AGACGTTACT GGTCAGTCCA AAGGTAAAGG CTTCGCCGGT ACCATCAAGC GCTGGAACTT CCGTGGTCAG GACAACACCC ACGGTAACTC CGTGTCGCAC CGTGTTCCTG GTTCCATCGG CCAGTGCCAG ACTCCTGGTC GTGTGTTCAA GGGCAAGAAA ATGTCCGGTC ACATGGGCGC CGAGCGCGTG ACTGTTCAGT CCCTGGAAGT AGTTCGCGTA GACGCTGAAC GCAACCTGCT GCTGATCAAG GGTGCCGTAC CTGGCGCTAC TGGCGGCGAC GTGGTTGTAC GTCCAGCTGT CAAGGCTCGC GGTTAA
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Protein sequence | MTIGVIGRKC GMTRIFTEEG VSIPVTVIEI EPNRVTQFKT EETDGYRAVQ VTVGERRASR VTAAQAGHFA KANVAAGRGV WEFRLEEGDF QAGDLIKAEL FTAGQLVDVT GQSKGKGFAG TIKRWNFRGQ DNTHGNSVSH RVPGSIGQCQ TPGRVFKGKK MSGHMGAERV TVQSLEVVRV DAERNLLLIK GAVPGATGGD VVVRPAVKAR G
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