Gene PP_0453 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0453 
SymbolrpsJ 
ID1044199 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp550659 
End bp550970 
Gene Length312 bp 
Protein Length103 aa 
Translation table11 
GC content54% 
IMG OID637143839 
Product30S ribosomal protein S10 
Protein accessionNP_742619 
Protein GI26987194 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0051] Ribosomal protein S10 
TIGRFAM ID[TIGR01049] ribosomal protein S10, bacterial/organelle 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0704355 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000189493 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGCAAAATC AGCAAATCCG TATCAGGTTG AAGGCTTTCG ACCATCGCCT GATCGACCAA 
TCCACCCAGG AAATCGTGGA AACCGCGAAA CGTACTGGTG CACAAGTGCG TGGTCCAATT
CCACTGCCTA CCCGCAAAGA GCGTTTCACC GTTCTGGTCT CCCCGCACGT CAACAAAGAC
GCGCGTGACC AGTACGAGAT TCGCACTCAT AAGCGTGTTC TGGACATCGT CCAGCCAACG
GATAAAACCG TTGACGCGCT GATGAAGCTT GATCTGGCGG CAGGTGTGGA AGTACAGATC
AGCCTCGGCT AA
 
Protein sequence
MQNQQIRIRL KAFDHRLIDQ STQEIVETAK RTGAQVRGPI PLPTRKERFT VLVSPHVNKD 
ARDQYEIRTH KRVLDIVQPT DKTVDALMKL DLAAGVEVQI SLG