| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0448 |
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| Symbol | rpoC |
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| ID | 1044191 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 541759 |
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| End bp | 545958 |
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| Gene Length | 4200 bp |
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| Protein Length | 1399 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637143834 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | NP_742614 |
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| Protein GI | 26987189 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.402854 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000011362 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | TTGAAAGACC TACTGAATTT GCTGAAAAAC CAGGGTCAAG TCGAAGAGTT CGACGCCATC
CGCATCGGTC TGGCGTCGCC TGAAATGATC CGTTCGTGGT CGTTCGGTGA AGTTAAGAAG
CCGGAAACCA TCAACTACCG TACGTTCAAG CCTGAGCGTG ACGGCCTGTT CTGCGCCAAG
ATCTTTGGCC CAGTCAAGGA CTACGAGTGC CTGTGCGGCA AGTACAAGCG CCTCAAGCAC
CGCGGCGTAA TCTGCGAGAA GTGCGGCGTT GAAGTTGCCC TGGCGAAGGT TCGTCGTGAG
CGCATGGCGC ACATCGAGCT GGCCTCGCCG GTTGCCCACA TCTGGTTCCT GAAGTCGCTG
CCGTCCCGTA TCGGCTTGCT GATGGACATG ACCCTGCGTG ATATCGAGCG CGTGCTCTAC
TTCGAGAGCT ATGTCGTTAT CGACCCGGGC ATGACTACCC TGGAAAAGGG CCAGCTGCTG
AACGACGAGC AGTACTTCGA AGCGCTGGAA GAGTTCGGTG ACGACTTCGA TGCCCGTATG
GGGGCCGAGG CTGTCCGCGA GCTGCTGCAC GCTATCGACC TGGAGCACGA GATCGGCCGC
CTGCGCGAAG AAATTCCGCA GACCAACTCG GAAACCAAGA TCAAGAAGCT TTCCAAGCGT
CTGAAGCTGA TGGAAGCTTT CCAGGGCTCG GGCAACCTGC CTGAGTGGAT GGTCCTGACC
GTCCTGCCAG TGCTGCCGCC GGACCTGCGT CCGCTGGTTC CGCTGGATGG TGGCCGTTTC
GCGACTTCCG ACCTGAACGA CCTGTATCGC CGGGTGATCA ACCGTAACAA CCGTCTGAAG
CGCCTGCTGG ATCTGTCGGC GCCGGACATC ATCGTGCGCA ACGAAAAGCG CATGCTGCAG
GAAGCGGTTG ACGCTCTGCT GGACAACGGC CGTCGTGGTC GCGCCATCAC TGGCTCGAAC
AAGCGTCCGC TGAAGTCCCT GGCCGACATG ATCAAAGGTA AGCAAGGTCG TTTCCGTCAG
AACTTGCTCG GTAAGCGTGT TGACTACTCC GGCCGTTCGG TAATTACCGT AGGTCCGACC
CTGCGTCTGC ACCAGTGCGG TCTGCCGAAG AAGATGGCCC TCGAGCTGTT CAAGCCGTTC
ATTTTCGGCA AGCTGGAAAT GCGTGGTCTG GCGACCACCA TCAAGGCTGC CAAGAAGATG
GTCGAGCGCG AGCTGCCAGA GGTGTGGGAC GTTCTCGCTG AAGTGATTCG CGAACACCCC
GTACTGCTCA ACCGTGCACC GACCCTTCAC CGTCTGGGTA TCCAGGCGTT TGAACCCGTA
CTGATCGAAG GTAAGGCTAT TCAGCTGCAC CCGCTGGTCT GTGCTGCGTA CAACGCCGAC
TTCGACGGTG ACCAGATGGC CGTTCACGTG CCGCTGACCC TGGAAGCCCA GCTCGAAGCG
CGTGCGCTGA TGATGTCGAC CAACAACATC CTGTCGCCAG CCAACGGTGA GCCAATCATC
GTTCCGTCGC AGGACGTTGT ACTGGGTCTG TACTACATGA CCCGGGAAGC CATCAATGCC
AAGGGCGAAG GTCGCGTGTT CGCCGACCTG CAGGAAGTCG ACCGCGTATT CCGCGCCGGC
GAAGCCGCCC TGCACGCGAA AATCAAGGTT CGTATCAACG AAACCGTGAA AGAGCGTGAT
GGCTCGGTGG TCAAGAACAC CCGCATCGTT GACACCACCG TCGGCCGTGC GCTGCTGTTC
CAGGTTGTGC CGGCAGGTCT GCCGTATGAC GTGGTCAACC AGCCGATGAA GAAAAAGGCG
ATCTCCAAGC TGATCAACCA GTGCTACCGC GTGGTTGGTC TGAAAGAGAC CGTTATCTTC
GCCGACCAAC TGATGTACAC CGGTTTCGCA TACTCGACCA TTTCCGGCGT TTCCATCGGT
GTTAACGACT TCGTTATCCC GGACGAGAAA GCCCGCATCA TCGGTAACGC TACCGATGAA
GTGAAGGAAA TCGAGAGCCA GTACGCCTCC GGCCTGGTAA CCCAGGGCGA GAAGTACAAC
AAGGTCATCG ACTTGTGGTC GAAGGCGAAC GACGAAGTGT CCAAGGCGAT GATGGCCAAC
CTCTCGAAAG AGAAGGTCAT CGACCGCGAA GGCAAGGAAG TCGAGCAAGA GTCCTTCAAC
TCGATGTACA TGATGGCTGA CTCGGGTGCG CGGGGTTCCG CAGCCCAGAT CCGTCAGCTG
GCCGGTATGC GTGGTCTGAT GGCCAAGCCG GACGGTTCCA TCATCGAGAC GCCGATCACC
GCGAACTTCC GTGAAGGTCT GAGCGTACTT CAGTACTTCA TCTCGACTCA CGGTGCTCGT
AAGGGTCTGG CGGATACCGC ACTGAAAACC GCTAACTCCG GTTACCTGAC TCGTCGTCTG
GTGGACGTTG CCCAGGATCT GGTAGTGACC GAGATCGACT GCGGCACCGA TCAGGGCCTG
GTGATGACGC CACACATCGA AGGCGGCGAC GTTGTAGAGC CACTGGGTGA GCGTGTATTG
GGTCGTGTCA TCGCCCGTGA CGTATTCAAG CCAGGCACCG AGGACGTTAT CGTTCCGGCC
GGTACCTTGG TCGACGAGCA GTGGGTCGAG TTCATCGAGC TGAACAGCAT CGACGAAGTG
ATCGTGCGTT CGCCGATCAA CTGCGAAACC CGCTACGGCA TTTGCGCCAA GTGCTACGGT
CGTGATCTGG CTCGTGGTCA CCAGGTGAAC ATCGGTGAGG CTGTCGGCGT TATCGCTGCC
CAGTCGATCG GTGAGCCGGG TACCCAGCTG ACCATGCGTA CGTTCCACAT CGGTGGTGCT
GCAAGCCGTA CCTCGGCTGC CGACAGCGTC CAGGTTAAGA ATGGCGGTAT GGTGCGTCTG
CACAACCTGA AGCAGGTTGA GCGTGCCGAC GGTAACCTGG TTGCCGTATC GCGTTCGGGT
GAGTTGGCGA TTGCTGACGA GTTCGGTCGT GAGCGTGAGC GCTACAAGCT GCCTTACGGT
GCGGTGATTT CGGTCAAGGA AGGTGAAAAG GTCGAAGCTG GCGCCATCGT CGCCAAGTGG
GACCCACACA CCCACCCGAT CGTTACCGAG CTGAAAGGTA CCGTGACCTT CGTGGGCATG
GAAGAAAACA TCACCATCAA GCGTCAGACC GACGAACTGA CCGGCTTGAC CAACATTGAA
GTACTGGACG TCAAGGATCG CCCTGCCGCA GGCAAGGAAA TCCGTCCGGC AATCAAGATG
GTCGATGCTG CAGGCAAGGA TCTGTACCTG CCAGGTACTG ACGTACCTGC CCAGTACTTC
CTGCCGGCCA ACGCCCTTGT CGGTGTGGCT GACGGTGCTC AGATCGGTGT TGGTGACGTT
ATCGCGCGTA TCCCGCAAGA GACGTCGAAG ACCCGTGACA TTACCGGTGG TCTGCCACGC
GTTGCCGACC TGTTCGAAGC GCGTCGTCCG AAAGAAGCCT CGATTCTGGC TGAAGTCAGC
GGCACCATCG CATTCGGTAA AGAGACCAAG GGCAAGCGTC GCCTGGTGAT CACTCCGACC
GACGGTAGCG AACCGTACGA AGAGCTGATT CCGAAGTGGC GCCACCTGAA CGTCTTCGAA
GGTGAACAGG TAAACCGCGG TGAAGTTATC TCCGACGGCC CGAGCGATCC GCATGACATC
CTGCGTCTGC TGGGTGTGAG TGCGCTGGCG AAGTACATCG TCAACGAGAT CCAGGACGTT
TACCGTCTGC AAGGCGTGAA GATCAACGAC AAGCACATCG AGACCATTCT GCGTCAGATG
CTGCGCAAGG TTGAGATCTC CGAGTCGGGC GATTCCAGCT TCATCAAGGG CGACCAGATG
GAACTGACCC AGGTGCTGGT AGAGAACGAG CGTCTCGCTA GCGAGGACAA GTTCATCTCC
AAGTTCACCC GAGTGCTGCT GGGTATCACC AAGGCCTCGC TGTCCACCGA GTCGTTCATC
TCCGCGGCTT CCTTCCAGGA AACAACCCGC GTACTGACCG AAGCGGCGGT AACCGGCAAG
CGCGACTACC TGCGCGGCCT GAAAGAGAAC GTGGTCGTGG GTCGTCTGAT CCCGGCCGGT
ACTGGTCTGG CCTACCACAG CGAGCGCAAG CGTCGCCGTG ATGCCGACAA ACCGCTGCGT
GTAAGCGCCA GTGAAGTGGA AGCTGCACTG ACCGAAGCGC TGAATTCCAG CGGTAATTAA
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| Protein sequence | MKDLLNLLKN QGQVEEFDAI RIGLASPEMI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVALAKVRRE RMAHIELASP VAHIWFLKSL
PSRIGLLMDM TLRDIERVLY FESYVVIDPG MTTLEKGQLL NDEQYFEALE EFGDDFDARM
GAEAVRELLH AIDLEHEIGR LREEIPQTNS ETKIKKLSKR LKLMEAFQGS GNLPEWMVLT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLSAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IFGKLEMRGL ATTIKAAKKM VERELPEVWD VLAEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTREAINA KGEGRVFADL QEVDRVFRAG
EAALHAKIKV RINETVKERD GSVVKNTRIV DTTVGRALLF QVVPAGLPYD VVNQPMKKKA
ISKLINQCYR VVGLKETVIF ADQLMYTGFA YSTISGVSIG VNDFVIPDEK ARIIGNATDE
VKEIESQYAS GLVTQGEKYN KVIDLWSKAN DEVSKAMMAN LSKEKVIDRE GKEVEQESFN
SMYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLSVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EIDCGTDQGL VMTPHIEGGD VVEPLGERVL
GRVIARDVFK PGTEDVIVPA GTLVDEQWVE FIELNSIDEV IVRSPINCET RYGICAKCYG
RDLARGHQVN IGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRTSAADSV QVKNGGMVRL
HNLKQVERAD GNLVAVSRSG ELAIADEFGR ERERYKLPYG AVISVKEGEK VEAGAIVAKW
DPHTHPIVTE LKGTVTFVGM EENITIKRQT DELTGLTNIE VLDVKDRPAA GKEIRPAIKM
VDAAGKDLYL PGTDVPAQYF LPANALVGVA DGAQIGVGDV IARIPQETSK TRDITGGLPR
VADLFEARRP KEASILAEVS GTIAFGKETK GKRRLVITPT DGSEPYEELI PKWRHLNVFE
GEQVNRGEVI SDGPSDPHDI LRLLGVSALA KYIVNEIQDV YRLQGVKIND KHIETILRQM
LRKVEISESG DSSFIKGDQM ELTQVLVENE RLASEDKFIS KFTRVLLGIT KASLSTESFI
SAASFQETTR VLTEAAVTGK RDYLRGLKEN VVVGRLIPAG TGLAYHSERK RRRDADKPLR
VSASEVEAAL TEALNSSGN
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