| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0447 |
|---|
| Symbol | rpoB |
|---|
| ID | 1044190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 537621 |
|---|
| End bp | 541694 |
|---|
| Gene Length | 4074 bp |
|---|
| Protein Length | 1357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637143833 |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | NP_742613 |
|---|
| Protein GI | 26987188 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.4615 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000104807 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTACT CATACACTGA GAAAAAACGT ATCCGCAAGG ACTTTAGCAA GTTGCCGGAC
GTCATGGATG TGCCTTACCT CCTGGCCATC CAGCTGGATT CGTATCGCGA ATTCCTGCAA
GCGGGAGCAT CCAAGGATCA CTTCCGCGAC GTCGGCCTGC ACGCGGCCTT CAAATCGGTA
TTCCCGATCA TCAGCTACTC CGGCAATGCT GCCCTGGAGT ACGTAGGCTA TCGCCTGGGC
GAACCCGCCT TCGATGTGAA GGAATGTGTC CTGCGTGGCG TGACCTTCGC GGTCCCACTG
CGGGTCAAGG TGCGCCTGAT CATCTTCGAC AAGGAATCGT CGAACAAAGC GATCAAGGAC
ATCAAAGAGC AAGAAGTCTA CATGGGTGAA ATCCCCCTGA TGACTGAGAA CGGTACCTTC
GTTATCAACG GTACCGAGCG TGTGATCGTT TCCCAGCTGC ACCGTTCGCC TGGTGTGTTC
TTCGACCACG ACCGTGGCAA GACCCACAGC TCGGGCAAGC TGCTGTACTC CGCTCGCATC
ATCCCTTACC GCGGTTCCTG GCTGGACTTC GAGTTCGACC CGAAGGACTG CGTGTTCGTG
CGTATCGACC GGCGCCGCAA ACTGCCGGCC TCGGTGCTGC TGCGCGCCCT GGGTTACAGC
ACTGAAGAAG TGCTGAACAC CTTCTACACC ACCAACGTGT TCCACATTTC CGGCGAAAAA
CTCAGCCTGG AACTGGTACC GCAGCGTCTG CGTGGTGAAG TTGCAGTCAT GGACATCCAT
GACGAAACCG GCAAAGTCAT CGTCGAGCAA GGCCGCCGTA TTACCGCGCG CCACATCAAC
CAGCTCGAGA AGGCCGGCGT CAAGCAACTG GACGTTCCAA TGGAATACGT CCTGGGCCGC
ACTACCGCCA AGGCTATCGT GCATCCGGCT ACCGGCGAAA TTCTCGCCGA ATGCAACACC
GAGATGACTA CCGAGCTGCT GATCAAGGTC GCCAAGGCGC AGGTTGTCCG TATCGAGACC
CTGTACACCA ACGACATCGA TTGCGGTCCG TTCATCTCTG ACACTCTGAA GATCGACACC
ACCAGCAACC AACTGGAAGC GCTGGTCGAG ATCTACCGCA TGATGCGTCC AGGCGAGCCG
CCAACCAAGG ACGCAGCCGA GACCCTGTTC AACAACCTGT TCTTCAGTGC CGAGCGTTAC
GATCTGTCCG CCGTAGGCCG CATGAAGTTC AACCGTCGTA TCGGTCGTAC CGAGATCGAG
GGTTCGGGCG TGCTGAGCAA GGAAGACATC GTCGAGGTTC TGAAGACCCT GGTCGATATC
CGTAACGGCA AAGGCATCGT CGACGACATC GACCACCTGG GTAACCGTCG CGTACGGTGC
GTCGGCGAGA TGGCCGAGAA CCAGTTCCGC GTTGGCCTGG TGCGTGTCGA GCGCGCGGTC
AAGGAACGCC TGTCGATGGC GGAAAGCGAA GGCCTGATGC CGCAAGACCT GATCAACGCC
AAGCCGGTAG CGGCAGCGGT GAAAGAGTTC TTCGGTTCCA GCCAGCTGTC CCAGTTCATG
GACCAGAACA ACCCTCTCTC GGAGATTACC CACAAGCGCC GCGTCTCCGC ACTCGGCCCT
GGCGGTCTGA CCCGTGAGCG TGCCGGCTTC GAAGTCCGTG ACGTACACCC GACCCACTAT
GGCCGTGTGT GCCCGATCGA GACCCCTGAA GGTCCGAACA TCGGTCTGAT CAACTCCCTG
GCGGCCTATG CCCGCACCAA CCAGTACGGC TTCCTGGAAA GCCCGTACCG CGTGGTGAAG
GAAGGCGTTG TCAGCGACGA CATCGTGTTC CTGTCGGCAA TCGAAGAGGC AGATCACGTC
ATCGCACAGG CTTCGGCCGC GATGAACGAC AAGAAGCAAC TGATCGATGA GCTGGTAGCA
GTTCGTCACC TGAACGAATT CACCGTCAAG GCGCCGGAAG ACGTCACCCT GATGGACGTT
TCGCCGAAGC AGGTTGTTTC CGTTGCAGCG TCGCTGATTC CGTTCCTCGA GCACGACGAC
GCCAACCGTG CGTTGATGGG TTCGAACATG CAGCGTCAGG CTGTACCGAC CCTGCGTGCC
GACAAGCCGC TGGTAGGTAC CGGCATGGAG CGCAACGTTG CCCGTGACTC CGGTGTCTGC
GTGGTTGCTC GCCGCGGTGG TGTGATCGAC TCGGTCGACG CCAGCCGTAT CGTTGTTCGC
GTTGCCGACG ACGAAGTGGA AACCGGCGAA GCGGGTGTGG ATATCTACAA CCTGACCAAG
TACACCCGTT CGAACCAGAA CACCTGCATC AACCAGCGTC CGCTGGTGAG CAAGGGTGAC
AAGGTTCAGC GTGGTGACAT CATGGCCGAC GGCCCGTCCA CCGACATGGG TGAGCTGGCT
CTGGGTCAGA ACATGCGCAT CGCGTTCATG GCGTGGAACG GCTTCAACTT CGAAGACTCC
ATCTGCCTGT CCGAGCGTGT TGTTCAGGAA GATCGCTTCA CCACCATCCA CATTCAGGAA
CTGACCTGTG TGGCGCGTGA CACCAAGCTC GGCCCAGAGG AAATCACTGC GGACATCCCG
AACGTGGGTG AAGCCGCACT GAACAAGCTG GACGAAGCCG GTATCGTTTA CGTAGGTGCT
GAAGTTGGCG CTGGCGACAT CCTGGTTGGC AAGGTCACGC CAAAAGGCGA AACCCAGCTG
ACTCCGGAAG AAAAACTGCT GCGCGCAATC TTCGGTGAGA AGGCCAGCGA CGTTAAGGAC
ACCTCCCTGC GTGTGCCAAC CGGCACCAAG GGTACTGTCA TCGACGTACA GGTCTTCACC
CGTGATGGCG TGGAGCGCGA TAGCCGCGCG CTGGCCATCG AGAAGATGCA GCTCGACGAG
ATCCGCAAGG ACCTCAACGA AGAGTTCCGC ATTGTTGAAG GTGCGACCTT CGAGCGTCTG
CGTTCTGCCC TGAACGGCCA GGTAGTTGAT GGTGGTGCGG GCCTGAAGAA AGGCACCGTG
ATCACTGACG AGGTGCTGGA CGGTCTGGAG CACGGCCAGT GGTTCAAACT GCGCATGGCT
GAAGATGCAC TGAACGAGCA GCTGGAAAAG GCTCAGCAGT ACATCGTCGA CCGTCGCCGT
CTGCTGGACG ACAAGTTCGA AGACAAGAAG CGCAAGCTGC AGCAGGGCGA TGACCTGGCA
CCGGGCGTAC TGAAGATCGT CAAGGTTTAC CTTGCAATCC GCCGCCGCAT CCAGCCGGGT
GACAAGATGG CCGGTCGTCA CGGTAACAAG GGTGTCGTCT CGGTCATCAT GCCGGTTGAA
GACATGCCGC ACGATGCCAA CGGTACTCCG GTTGACGTCG TACTGAACCC GCTGGGTGTA
CCTTCGCGTA TGAACGTTGG TCAGATCCTT GAAACCCACC TGGGCCTCGC GGCCAAGGGT
CTGGGCGAGA AGATCGACCG CATGCTCGAA GAGCAGCGTA AAGCCGCTGA GCTGCGCGTG
TTCCTGACCG AGGTCTACAA CGAGATCGGC GGTCGTCAGG AAAACCTCGA CGAGTTCACC
GACGAAGAAA TCCTGGCCCT GGCTAACAAC CTGAAGAAAG GCGTGCCTAT GGCTACCCCG
GTCTTCGATG GTGCCAAGGA GCGCGAGATC AAGGCCATGC TGAAGCTGGC CGACCTGCCA
GAGAGCGGCC AGATGGTGCT GTTCGATGGC CGTACCGGCA ACAAGTTCGA GCGTCCTGTG
ACCGTTGGTT ACATGTACAT GCTCAAGCTG AACCACTTGG TGGACGACAA GATGCACGCG
CGTTCCACTG GTTCCTACAG CCTGGTTACC CAGCAGCCGC TGGGTGGTAA GGCGCAGTTC
GGTGGTCAGC GTTTCGGGGA GATGGAAGTG TGGGCGCTGG AAGCATACGG CGCGGCATAC
ACCCTGCAAG AAATGCTCAC AGTGAAGTCG GACGACGTGA ACGGCCGTAC CAAGATGTAC
AAGAACATCG TGGATGGCGA TCACCGTATG GAGCCGGGCA TGCCCGAGTC CTTCAACGTG
TTGATCAAAG AGATCCGTTC GCTCGGTATC GATATCGATC TGGAAACCGA ATAA
|
|---|
| Protein sequence | MAYSYTEKKR IRKDFSKLPD VMDVPYLLAI QLDSYREFLQ AGASKDHFRD VGLHAAFKSV
FPIISYSGNA ALEYVGYRLG EPAFDVKECV LRGVTFAVPL RVKVRLIIFD KESSNKAIKD
IKEQEVYMGE IPLMTENGTF VINGTERVIV SQLHRSPGVF FDHDRGKTHS SGKLLYSARI
IPYRGSWLDF EFDPKDCVFV RIDRRRKLPA SVLLRALGYS TEEVLNTFYT TNVFHISGEK
LSLELVPQRL RGEVAVMDIH DETGKVIVEQ GRRITARHIN QLEKAGVKQL DVPMEYVLGR
TTAKAIVHPA TGEILAECNT EMTTELLIKV AKAQVVRIET LYTNDIDCGP FISDTLKIDT
TSNQLEALVE IYRMMRPGEP PTKDAAETLF NNLFFSAERY DLSAVGRMKF NRRIGRTEIE
GSGVLSKEDI VEVLKTLVDI RNGKGIVDDI DHLGNRRVRC VGEMAENQFR VGLVRVERAV
KERLSMAESE GLMPQDLINA KPVAAAVKEF FGSSQLSQFM DQNNPLSEIT HKRRVSALGP
GGLTRERAGF EVRDVHPTHY GRVCPIETPE GPNIGLINSL AAYARTNQYG FLESPYRVVK
EGVVSDDIVF LSAIEEADHV IAQASAAMND KKQLIDELVA VRHLNEFTVK APEDVTLMDV
SPKQVVSVAA SLIPFLEHDD ANRALMGSNM QRQAVPTLRA DKPLVGTGME RNVARDSGVC
VVARRGGVID SVDASRIVVR VADDEVETGE AGVDIYNLTK YTRSNQNTCI NQRPLVSKGD
KVQRGDIMAD GPSTDMGELA LGQNMRIAFM AWNGFNFEDS ICLSERVVQE DRFTTIHIQE
LTCVARDTKL GPEEITADIP NVGEAALNKL DEAGIVYVGA EVGAGDILVG KVTPKGETQL
TPEEKLLRAI FGEKASDVKD TSLRVPTGTK GTVIDVQVFT RDGVERDSRA LAIEKMQLDE
IRKDLNEEFR IVEGATFERL RSALNGQVVD GGAGLKKGTV ITDEVLDGLE HGQWFKLRMA
EDALNEQLEK AQQYIVDRRR LLDDKFEDKK RKLQQGDDLA PGVLKIVKVY LAIRRRIQPG
DKMAGRHGNK GVVSVIMPVE DMPHDANGTP VDVVLNPLGV PSRMNVGQIL ETHLGLAAKG
LGEKIDRMLE EQRKAAELRV FLTEVYNEIG GRQENLDEFT DEEILALANN LKKGVPMATP
VFDGAKEREI KAMLKLADLP ESGQMVLFDG RTGNKFERPV TVGYMYMLKL NHLVDDKMHA
RSTGSYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY TLQEMLTVKS DDVNGRTKMY
KNIVDGDHRM EPGMPESFNV LIKEIRSLGI DIDLETE
|
|---|
| |