Gene PP_0444 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0444 
SymbolrplA 
ID1044187 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp535564 
End bp536259 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content57% 
IMG OID637143830 
Product50S ribosomal protein L1 
Protein accessionNP_742610 
Protein GI26987185 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0081] Ribosomal protein L1 
TIGRFAM ID[TIGR01169] ribosomal protein L1, bacterial/chloroplast 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.833491 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000290351 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGCTAAGC TGACCAAACG CCAAAAGGCA ATCGCCGAGA AAATCGAAGC AGGCAAGGCC 
TACAACTTCG AAGAAGCGGC AACTCTGCTG GCCTCGCTGC CTGCTGCCAA GTTCGTCGAG
TCCTACGACA TCGCCGTTAA CCTCGGTGTT GACCCGCGTA AATCCGACCA GGTCGTACGT
AGCGCTACCG TGCTGCCACA CGGCACTGGC AAGACCGTTC GCGTTGCTGT CTTCACCCAG
GGTCCAGCAG CTGAAGCTGC TCTGGCTGCC GGCGCTGATC GCGTAGGTAT GGACGATCTG
GCTGCCGAAA TGAAAGGCGG CGACCTGAAC TATGACGTCG TTATCGCATC GCCTGATGCC
ATGCGCGTTG TAGGTCAGCT GGGTCAGGTT CTGGGTCCTC GCGGCCTGAT GCCTAACCCG
AAAGTTGGTA CCGTGACCCC AGACGTAGCC ACTGCCGTGA AAAACGCCAA GGCTGGTCAG
GTTCGCTACC GTACCGACAA AAACGGTATC ATCCACACCT CCGTTGGCAA GATCGGCTTT
GAAGCTGACA AGCTGAAGGA AAACGTTGAA GCCCTGATCG CTGACCTGAA GCGTATCAAG
CCAGCTTCCT CGAAAGGTAT CTACGTTAAG CGCGTTACCC TGAGCACCAC CATGGGCCCA
GGTCTGGTCA TCGATCAGAG CTCGCTGAAC GTGTAA
 
Protein sequence
MAKLTKRQKA IAEKIEAGKA YNFEEAATLL ASLPAAKFVE SYDIAVNLGV DPRKSDQVVR 
SATVLPHGTG KTVRVAVFTQ GPAAEAALAA GADRVGMDDL AAEMKGGDLN YDVVIASPDA
MRVVGQLGQV LGPRGLMPNP KVGTVTPDVA TAVKNAKAGQ VRYRTDKNGI IHTSVGKIGF
EADKLKENVE ALIADLKRIK PASSKGIYVK RVTLSTTMGP GLVIDQSSLN V