Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0444 |
Symbol | rplA |
ID | 1044187 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 535564 |
End bp | 536259 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637143830 |
Product | 50S ribosomal protein L1 |
Protein accession | NP_742610 |
Protein GI | 26987185 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0081] Ribosomal protein L1 |
TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.833491 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.000000290351 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGGCTAAGC TGACCAAACG CCAAAAGGCA ATCGCCGAGA AAATCGAAGC AGGCAAGGCC TACAACTTCG AAGAAGCGGC AACTCTGCTG GCCTCGCTGC CTGCTGCCAA GTTCGTCGAG TCCTACGACA TCGCCGTTAA CCTCGGTGTT GACCCGCGTA AATCCGACCA GGTCGTACGT AGCGCTACCG TGCTGCCACA CGGCACTGGC AAGACCGTTC GCGTTGCTGT CTTCACCCAG GGTCCAGCAG CTGAAGCTGC TCTGGCTGCC GGCGCTGATC GCGTAGGTAT GGACGATCTG GCTGCCGAAA TGAAAGGCGG CGACCTGAAC TATGACGTCG TTATCGCATC GCCTGATGCC ATGCGCGTTG TAGGTCAGCT GGGTCAGGTT CTGGGTCCTC GCGGCCTGAT GCCTAACCCG AAAGTTGGTA CCGTGACCCC AGACGTAGCC ACTGCCGTGA AAAACGCCAA GGCTGGTCAG GTTCGCTACC GTACCGACAA AAACGGTATC ATCCACACCT CCGTTGGCAA GATCGGCTTT GAAGCTGACA AGCTGAAGGA AAACGTTGAA GCCCTGATCG CTGACCTGAA GCGTATCAAG CCAGCTTCCT CGAAAGGTAT CTACGTTAAG CGCGTTACCC TGAGCACCAC CATGGGCCCA GGTCTGGTCA TCGATCAGAG CTCGCTGAAC GTGTAA
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Protein sequence | MAKLTKRQKA IAEKIEAGKA YNFEEAATLL ASLPAAKFVE SYDIAVNLGV DPRKSDQVVR SATVLPHGTG KTVRVAVFTQ GPAAEAALAA GADRVGMDDL AAEMKGGDLN YDVVIASPDA MRVVGQLGQV LGPRGLMPNP KVGTVTPDVA TAVKNAKAGQ VRYRTDKNGI IHTSVGKIGF EADKLKENVE ALIADLKRIK PASSKGIYVK RVTLSTTMGP GLVIDQSSLN V
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