Gene PP_0394 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0394 
Symbolcca 
ID1044107 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp478361 
End bp479467 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content63% 
IMG OID637143774 
Productmultifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 
Protein accessionNP_742561 
Protein GI26987136 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0617] tRNA nucleotidyltransferase/poly(A) polymerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.936074 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACATCT ACAAAGTTGG CGGCGCCGTG CGCGACCGTT TGCTCGGCCG CCCTGTCAGC 
GATATCGACT GGCTGGTGGT GGGCGCCACC GTCGAAGAAA TGCTAGCAAA TGGCTATCGG
CCGGTGGGAG CCGATTTCCC GGTGTTCCTG CACCCGAAAA CCGGTGAGGA ATACGCCCTG
GCGCGCACCG AGCGCAAGAG TGGGCGAGGC TACGGCGGGT TCACTTTTCA CGCCAGCCCC
GACGTAACCC TGGAAGAAGA CCTGATCCGC CGCGACCTCA CCATCAATGC GATGGCCGAG
GATGAGGCGG GCACAGTCTA CGACCCCTAC CAAGGCAAGA ACGATCTGGA TCAACGCCTG
CTACGCCATG TTTCCCCGGC ATTCGCCGAA GATCCTTTGC GGGTGCTGCG CGTTGCACGC
TTTGCTGCCC GTTACGCACC ACTGGGGTTC CGGGTTGCCG ATGAAACCTT GGCGCTGATG
CGCCAGATCA GCGCCTCAGG CGAACTGCAG GCACTCACTG CCGAGCGCAG CTGGAAGGAA
ATCGAGCGCG CGCTGATGGA AGTGCAACCG CAGGTATTCT TCAAGGTGCT GAGCGCGTGT
GGGGCCCTGC AGGAGCTGCT GCCTGAGCTC GATGACGGCT CCCGGACATT GGCGGCGCTG
GAGCAGGCGG CGGCGCACGA ACAACCGCTG AACGTGCGCT GGGCCTGCCT GTTGCGGGGG
TTGCCACCGA CATCGATCAA AGCCGTCAAC CAGCGCCTGA AGGCACCGCG AGAGTGCCAG
GAACTGGCCA TGCTGACCGG GGAATGCCTG GCGCAGGGTA ATCAGGCGCT CGAACTGCCT
GCCACGGCAC TGCTGGAGCT GTTGCAGAAA TTCGATGTTT ACCGACGGCC GCAGCGATTT
GAGGATTTTT TGACCGTTTG CGAGATGGCG GCGCGGGGCG ATGGCGAGCA GGGTTACCCA
CAGGCCGATT ACCTGCGAGG CGCAGCAGCG GCGGCGCGAG CGGTGGATGT GAAGCCGTTG
GTGCAAGCCG GGCTGACCGG TCAGGCACTG GGCGAAGCAC TCAAAGGTGA ACGGCTGAAA
GCGCTCGAGG CTTACCAGCG CGGTTAG
 
Protein sequence
MHIYKVGGAV RDRLLGRPVS DIDWLVVGAT VEEMLANGYR PVGADFPVFL HPKTGEEYAL 
ARTERKSGRG YGGFTFHASP DVTLEEDLIR RDLTINAMAE DEAGTVYDPY QGKNDLDQRL
LRHVSPAFAE DPLRVLRVAR FAARYAPLGF RVADETLALM RQISASGELQ ALTAERSWKE
IERALMEVQP QVFFKVLSAC GALQELLPEL DDGSRTLAAL EQAAAHEQPL NVRWACLLRG
LPPTSIKAVN QRLKAPRECQ ELAMLTGECL AQGNQALELP ATALLELLQK FDVYRRPQRF
EDFLTVCEMA ARGDGEQGYP QADYLRGAAA AARAVDVKPL VQAGLTGQAL GEALKGERLK
ALEAYQRG