Gene PP_0387 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPP_0387 
SymbolrpoD 
ID1044097 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida KT2440 
KingdomBacteria 
Replicon accessionNC_002947 
Strand
Start bp471083 
End bp472933 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content60% 
IMG OID637143767 
ProductRNA polymerase sigma factor RpoD 
Protein accessionNP_742554 
Protein GI26987129 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00859546 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGGAA AAGCGCAACA GCAGTCTCGT ATCAAAGAGT TGATCACCCG CGGTCGTGAG 
CAGGGCTACC TGACTTACGC GGAGGTCAAC GACCACCTGC CTGAGGATAT TTCAGATCCG
GAACAGGTGG AAGACATCAT CCGCATGATC AACGACATGG GGATCAACGT ATTCGAGAGT
GCTCCGGATG CGGATGCCCT TCTGTTGGCG GAAGCCGACA CCGATGAAGC CGCGGCCGAA
GAAGCCGCTG CTGCATTGGC GGCAGTTGAA ACCGATATCG GCCGCACGAC CGACCCGGTG
CGCATGTATA TGCGCGAAAT GGGTACTGTC GAGCTGCTGA CCCGCGAAGG CGAGATCGAA
ATCGCCAAGC GTATCGAGGA AGGCATTCGT GAAGTCATGG GCGCCATCGC CCACTTCCCG
GGCACTGTCG ACTACATTCT CGGCGAATAT GACCGCGTCA CCACCGAGGG TGGCCGCCTG
TCGGACGTTC TCAGCGGTTA CATCGACCCT GACGACAACA TTGCCGCGCC AACCGAAGAA
GTGCCGATCC CAGGTGCCAA GGCCGCTGCG GCGAAGGAAG AGTCCGACGA CGACGAAGAA
GAATCCGAAA GCGGTGACGA CGAGGAAGAG GCCGAGAGCG GCCCGGATCC GGTCGTCGCA
GCCCAACGCT TCGGTGCGGT ATCCGATCAG CTTCAGGCAA CCTCCAAGGT CCTGAAGAAA
AATGGTCGCA ACCACAAGGA AAGCATCGAG GCCCTGCAGG CCCTGGCTGA CCTGTTCATG
CCGATCAAGC TGGTACCGAA GCAGTTCGAG GTACTGGTCG AGCGTGTCCG TGACGCCCTG
AACCGTCTGC GACAGCAAGA ACGCGCCATC ATGCAGCTGT GCGTACGTGA CGCCCGCATG
CCGCGAGCCG ACTTCCTGCG CATGTTCCCA AGCAACGAAA CCGACCAGAC CTGGAGCGGT
GACCTGGCCA AGCGCAACAC CAAGTGGGCT GCCGCCCTGG GTGAAAAGAA CGCTGCCATC
GTCGCTTGCC AACAGAAGCT GATCGACCTT GAGACCGAAA CCGGCCTGAC CGTTGCCGAG
ATCAAGGAAA TCAACCGTCG CATGTCGATC GGTGAAGCCA AGGCCCGCCG CGCCAAGAAA
GAAATGGTCG AGGCGAACCT GCGTCTGGTG ATTTCCATCG CCAAGAAGTA CACCAACCGT
GGCCTGCAGT TCCTCGACCT GATCCAGGAA GGCAACATCG GTCTGATGAA AGCGGTGGAC
AAGTTCGAAT ACCGTCGCGG CTACAAGTTC TCGACCTATG CCACCTGGTG GATCCGTCAG
GCGATCACCC GTTCGATCGC CGACCAGGCA CGCACCATCC GCATTCCGGT GCACATGATC
GAGACGATCA ACAAGCTCAA CCGTATTTCC CGCCAGATGC TGCAGGAAAT GGGTCGCGAA
CCGACTCCGG AAGAGCTGGG CGAGCGCATG GAAATGCCTG AGGACAAAAT CCGCAAGGTA
TTGAAGATCG CCAAAGAGCC GATCTCCATG GAAACCCCGA TCGGTGACGA CGAAGATTCG
CACCTGGGCG ACTTCATCGA GGACTCGACC ATGCAGTCCC CGATCGACGT GGCCACGGTC
GAAAGCCTCA AGGAAGCCAC CCGTGACGTG CTCTCGGGCC TGACCGCACG TGAAGCCAAG
GTGCTGCGCA TGCGTTTCGG TATCGACATG AACACCGACC ACACCCTCGA AGAGGTGGGC
AAGCAGTTTG ACGTAACGCG TGAGCGGATC CGTCAGATCG AAGCGAAGGC GTTGCGCAAG
CTGCGCCACC CGACTCGCAG CGAGCACCTG CGCTCCTTCC TCGACGAGTG A
 
Protein sequence
MSGKAQQQSR IKELITRGRE QGYLTYAEVN DHLPEDISDP EQVEDIIRMI NDMGINVFES 
APDADALLLA EADTDEAAAE EAAAALAAVE TDIGRTTDPV RMYMREMGTV ELLTREGEIE
IAKRIEEGIR EVMGAIAHFP GTVDYILGEY DRVTTEGGRL SDVLSGYIDP DDNIAAPTEE
VPIPGAKAAA AKEESDDDEE ESESGDDEEE AESGPDPVVA AQRFGAVSDQ LQATSKVLKK
NGRNHKESIE ALQALADLFM PIKLVPKQFE VLVERVRDAL NRLRQQERAI MQLCVRDARM
PRADFLRMFP SNETDQTWSG DLAKRNTKWA AALGEKNAAI VACQQKLIDL ETETGLTVAE
IKEINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD
KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE
PTPEELGERM EMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDST MQSPIDVATV
ESLKEATRDV LSGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK
LRHPTRSEHL RSFLDE