| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0337 |
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| Symbol | |
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| ID | 1044039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | - |
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| Start bp | 403365 |
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| End bp | 406055 |
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| Gene Length | 2691 bp |
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| Protein Length | 896 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637143716 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | NP_742504 |
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| Protein GI | 26987079 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.456213 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGCC AACCCGATGC CGCCAGCCGT GTGGCGGCCG AGGTCGTGAC ACAGTTACCC
GTGCCCTCGC GGCTCGGCAT GCTGCGTTTC GAAAGGCTCA ACGAAGCCAC CTGGGCCATG
CTCTACCTTG ACCCAGCCTG TGAGCGCCAG TTCGGCCTGA AAACCGGCGA GCTGTGTGCC
CTGATTGACG CGCCCTACGC CAGCCTGATG GAACCCGAAG CACGCTACCG GCTGCACGAC
GACATCCAGT TGCAACTGGC CCAGCGCGGT TACTATCGCG TGCGCTACAC CCTGCACACG
CCGAGCACCT CGCTGCGCCT GCTGGAAGCG GGTGAAGCCT ACAAGCAACA CAACCGCCAG
CTGTTGCGCG GCTACCTGAG CGTGCTCGAT GACCAGCAGG AAGAGACCGG CGAACCCGGC
GCCAGCGACC TGGAGTCACG CAACAACCGC CTGCAACTGG CCCTGCAGCT GAACCAGCGC
ACGCAGCAAG AACAACTGGA GCACCTGGAG CGGGTGCGCG GCCAGCAGGA CCTTATCCTG
CGCCTCGCCC GCCATCGCTA CAGCGCGGGC AACTCGCTGC TCGAAGCGGC CCAGCTGATC
ACCCAGAGCG CCTGCGAAAT CTACAAGGTC GACTGCGCCA GCATCTGGCA CCTGGAAGAC
CAACGCCTGG AACCGATCAT CGCCTGGTAC CGCGACGCAC AGGAGCACCG CCAGCCCGAA
GCCATCGATG CCAGCCGCTT CCCCGACTAC CTGGATGCAC TGCACGCAAG CCGCGCCATC
GACGCTCACA ACGCCGGCCA CGACCCGCGC ACCCGCGCCC TGGCGCAAAG CATGCGCCCG
GAAAACAAGG CCATGCTCGA CGCCAGCATC CGTGTCGATG GCCAGGTGAT CGGCGTGTTG
TGCCTGGAGC AAAGCGGCCA GCCAAGGGCC TGGCAGTCGG ACGAGATTGC CTTTGCCGGT
GAGCTGGCCG ACCAGTTCGC CCAAGTGATC ACAAACCACA AACGACGGGC CGCGGCCAGC
GCCCTGCACC TGTTCCAGCG TGCGGTCGAG CAGAGCGCCA GTGCCTTCCT GCTGGTGAAC
CGCGACGGCC GGGTGGAGTA CGTCAACCCC AGCTTCACCG CCATCACCCA GTACAGTACC
GACGAAGTGC AGGGCCGCCA GCTGGGTGAG CTACCGGCAC TGGAGAACCT CAGCGAACTG
CTGTTCGACT CGCCGTCGAG CCTGGCCATG GGCAACAGTT GGCAGGGCGA GTTCAAGAGC
CGACGCAAAA ACCTGGAGCC GTACTGGGGC CAGTTGTCGA TTTCCAAGGT GTACGGTGAC
AACCGTGAGC TGACCCACTA CATCGGCATC TACGAAGACG TCACCCAGAC CAAGCTGGCC
CAGCAACGCA TCGAACGCCT GGCTTACACC GACAACCTCA CCAACCTGGG CAACCGCCCG
GCGTTCATCC GCAGCCTGGA CGAACGCTTC GCCCGCGATG GCGAAAGCTC GATGTGCCTG
CTGCTGGTGG ACATCGACAA CTTCAAGCGC ATCAACGACA GCCTTGGCCA CCAGACCGGC
GACAAGCTGC TGATCAGCCT GGCCAGGCGT TTGCGCAACA GCCTGCACAG CGGTGGCATC
CTGGCGCGCT TTGCCAGTAA CGAGTTCGCC GTGCTGCTCG ACGACACCAG CCTTGAAGAT
GGCCAAGGCG TTGCTCAACA GTTGTTGTGC ACCCTCGACA AGCCGATGTT CGTCGACAAC
CAGCTGATCA ACGTCACCGC CTCGGTAGGC CTGGCCTGTG CACCGTTGCA CGGCGTCGAC
CCGGCCAGCC TGATGAAGAA TGCCGGCCTT GCATTGCACA AGGCCAAGGC CAACGGTAAA
CACCAGGTAC AGGTGTTTAC CGAAGTGCTC AACGCCGAAG CCAGCTACAA GCTGTTCGTC
GAGAACAACC TGCGCCGTGC CCTGACCCAG AACGAGCTGG ACGTGTTCTA CCAGCCCAAG
CTGTGCCTGC GCAGCGGTCG CCTGCTGGGC CTGGAAGCGC TGCTGCGCTG GAACCACCCC
GAACGCGGCA TGATCCGCCC GGACCAGTTC ATCAGCGTGG CCGAGGAAAC CGGCCTGATC
ATCCCTATCG GCAAATGGGT GGTGCGCCAG GCGTGCTGCA TGAGCCAGCA ACTGCGCAAG
GCCGGTCTGG GCAACCTGCA TGTAGCCATC AACCTGTCGC CCAAACAGTT CTCCGACCCG
GACCTGGTGG CGTCGATCAG CACCATCCTC AAGGAAGAAG CCCTGCCCCC ACACCTGCTG
GAGCTGGAGC TGACCGAAGG CCTGCTGCTG GAAGCCAGCG AAGACACCCA CCGCCAGCTG
GACGAACTGA AGGCCCTGGG CCTGACCTTG GCCATGGACG ACTTCGGCAC CGGTTATTCG
TCGCTGAGCT ACCTGAAGAA GTTTCCGATC GACATCCTCA AGATCGATCG CAGCTTCATC
AACGAAATCC CCGACAACCA GGACGACATG GAAATCACCT CGGCGGTGGT GGCCATGGCC
CACAACCTGA AGCTGAAGGT GGTGGCCGAA GGGATCGAGA CGCCGGAGCA GCTGGCGTTC
CTGCGCCGTC ACCGCTGCGA CGTGGGCCAG GGCTACCTGT TCGACCGGCC GATTCCCGGG
CGCGAACTGG CCGAGCGGCT GAAGCGCTAT CCGCGTGGCC CGGTGGCCTG A
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| Protein sequence | MKSQPDAASR VAAEVVTQLP VPSRLGMLRF ERLNEATWAM LYLDPACERQ FGLKTGELCA
LIDAPYASLM EPEARYRLHD DIQLQLAQRG YYRVRYTLHT PSTSLRLLEA GEAYKQHNRQ
LLRGYLSVLD DQQEETGEPG ASDLESRNNR LQLALQLNQR TQQEQLEHLE RVRGQQDLIL
RLARHRYSAG NSLLEAAQLI TQSACEIYKV DCASIWHLED QRLEPIIAWY RDAQEHRQPE
AIDASRFPDY LDALHASRAI DAHNAGHDPR TRALAQSMRP ENKAMLDASI RVDGQVIGVL
CLEQSGQPRA WQSDEIAFAG ELADQFAQVI TNHKRRAAAS ALHLFQRAVE QSASAFLLVN
RDGRVEYVNP SFTAITQYST DEVQGRQLGE LPALENLSEL LFDSPSSLAM GNSWQGEFKS
RRKNLEPYWG QLSISKVYGD NRELTHYIGI YEDVTQTKLA QQRIERLAYT DNLTNLGNRP
AFIRSLDERF ARDGESSMCL LLVDIDNFKR INDSLGHQTG DKLLISLARR LRNSLHSGGI
LARFASNEFA VLLDDTSLED GQGVAQQLLC TLDKPMFVDN QLINVTASVG LACAPLHGVD
PASLMKNAGL ALHKAKANGK HQVQVFTEVL NAEASYKLFV ENNLRRALTQ NELDVFYQPK
LCLRSGRLLG LEALLRWNHP ERGMIRPDQF ISVAEETGLI IPIGKWVVRQ ACCMSQQLRK
AGLGNLHVAI NLSPKQFSDP DLVASISTIL KEEALPPHLL ELELTEGLLL EASEDTHRQL
DELKALGLTL AMDDFGTGYS SLSYLKKFPI DILKIDRSFI NEIPDNQDDM EITSAVVAMA
HNLKLKVVAE GIETPEQLAF LRRHRCDVGQ GYLFDRPIPG RELAERLKRY PRGPVA
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