| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0325 |
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| Symbol | soxA |
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| ID | 1044023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 389725 |
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| End bp | 392739 |
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| Gene Length | 3015 bp |
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| Protein Length | 1004 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637143704 |
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| Product | sarcosine oxidase, alpha subunit family |
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| Protein accession | NP_742492 |
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| Protein GI | 26987067 |
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| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
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| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.684006 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0259905 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGA CCTATCGCCT CGCCAGCGGC GGCCGTATCG ACCGCAGCAA GGTCCTGAAC
TTCACCTTCA ACGGCAAGAC CTACCAGGGT TATGCCGGTG ACAGCCTGGC CGCCGCGTTG
CTGGCCAACG GCGTCGACAT TGTCGGCCGT AGCTTCAAGT ACTCGCGCCC ACGCGGCATC
ATCGCCGCCG GTACCGAAGA GCCGAACGCC ATCCTGCAGA TCGGCTCCAG CGAAGCTACC
CAGATCCCCA ACGTGCGCGC CACCCAACAG GCACTGTACG CGGGCCTTGT CGCCACCAGC
ACCAACGGTT GGCCGAACGT CAACAACGAC GTCATGGGCA TCCTCGGCAA GGTTGGCGGC
AGCATGATGC CGCCGGGCTT CTACTACAAA ACCTTCATGT ACCCCAAATC GTTCTGGATG
ACTTACGAGA AGTACATCCG TAAAGCCGCC GGCCTGGGCC GTGCGCCGCT GCAGAACGAT
CCTGACAGCT ACGACTACAT GAACCGGCAC TGCGACGTGC TGATCGTCGG CGCCGGCCCT
GCTGGCCTGG CTGCCGCACT GGCCGCTGCG CGCAGTGGTG CCCGCGTGAT CCTGGCTGAC
GAGCAGGAAG AGTTCGGCGG CAGCCTGCTC GACACCCGCG AAACCCTCGA CGGCAAGCCT
GCTGCCGACT GGGTCAACGC CGTGGTCAAA GAGCTGGAAG GCCTGCCGGA AGTGACCCTG
CTGCCACGTG CCACGGTCAA CGGCTACCAC GACCATAACT TCCTGACCAT TCACGAGCGC
CTCACCGACC ACCTCGGCGA TCGCGCCCCG ATCGGTCAGG TTCGCCACCG CGTGCACCGC
GTTCGCGCCA AGCGCGTGGT ACTGGCTGCC GGCGCCCACG AGCGCCCGCT GGTGTACGGC
AACAACGACG TGCCGGGCAA CATGCTGGCC GGTGCTGTAT CCACCTATGT TCGCCGCTAT
GGCGTGGCGC CGGGTCGCAA GTTGGTACTG TCGACCAACA ACGACCACGC TTATCGCGCC
GCGCTGGACT GGCACGACGC AGGCCTGCAA GTGGTCGCCA TCGCCGACGC CCGCCACAAC
CCACGTGGCT CGCTGGTTGA AGAAGCGCGT GCCAAAGGCA TTCGCATACT CACCTCCAGC
GCCGTGATCG AGGCCAAAGG CAGCAAGCAC GTCACCGGCG CCCGTGTGGC GGCGATCGAT
GTGCAGGCGC ACAAAGTCAC CAGCCCAGGC GAAGTCCTTG AGTGCGACCT GATCGCCTCC
TCGGGCGGTT ACAGCCCGAT CGTGCACCTG GCTTCGCACC TGGGCGGTCG CCCGGTATGG
CGTGACGACA TCCTTGGCTT CGTGCCGGGC GATGCGCCGC AGAAGCGTGA GTGCGTCGGT
GGTATCAACG GCGTGTATGC CTTGGGCGAT GTCATTGCCG ATGGCTTCGA AGGCGGCGTC
CGCGCAGCCA CCGAGGCCGG TTTCAAGGCC ACTGTCGGCA CCCTGCCAAA AACAGTGGCG
CGCAAGGAAG AGGCCACTGT GGCACTGTTC CTGGTGCCGC ACGACAAAGG CACCAAGGGG
CCGAAGCAGT TCGTCGACCA GCAGAACGAC GTGACCGCAG CCGGTATCGA GCTGGCCACC
CGTGAAGGCT TCGAGTCGGT CGAGCACGTC AAGCGCTACA CCGCGCTGGG CTTCGGTACC
GACCAGGGCA AACTGGGCAA CATCAACGGC CTGGCCATCG CCGCCCGTTC GATCGGCATC
ACCATCCCGG AAATGGGTAC CACCATGTTC CGCCCCAACT ACACGCCGGT TACTTTCGGC
GCGGTAGCGG GCCGTCACTG TGGTCACCTG TTCGAGCCCG TGCGCTTCAC TGCCCTGCAT
GCCTGGCACG TGAAGAACGG CGCCGAGTTC GAAGACGTCG GCCAGTGGAA GCGCCCGTGG
TACTTCCCGA AAGCCGGTGA AGACATCCAT GCTGCCGTGA CTCGCGAATG CAAGGCCGTG
CGCGACAGCG TGGGCCTGCT GGACGCCTCG ACCCTGGGCA AGATCGACAT CCAGGGCCCG
GACGCGCGCG AGTTCCTCAA CCGCATCTAC ACCAACGCCT GGACCAAGCT CGACGTGGGC
AAGGCCCGCT ACGGCCTGAT GTGCAAGGAA GACGGCATGG TCTTCGACGA CGGCGTAACC
GCCTGCGTCG GCGACAACCA CTTCATCATG ACCACCACCA CCGGCGGCGC TGCCCGCGTA
TTGCAGTGGA TGGAGCTGTA TCACCAGACC GAATGGCCAG AGCTGAAGGT GTACTTCACT
TCGGTCACCG ACCACTGGGC CACCATGACC CTGTCCGGCC CTAACAGCCG CAAGCTGCTG
AGCGAGCTGA CCGACATCGA CATGGACAAG GAAGCCTTCC CGTTCATGAC CTGGAAGGAA
GGCAACGTCG GTGGCGTGCC GGCCCGCGTG TTCCGTATCT CGTTCACCGG CGAGCTGTCG
TACGAAGTGA ACGTGCAGGC CAACTACGCC ATGGGCGTGC TGGAACAGAT CATCGAGGCC
GGCAAGAAGT ACAACCTGAC CCCGTACGGC ACCGAGACCA TGCACGTACT GCGTGCAGAG
AAGGGCTTCA TCATCGTGGG CCAGGACACC GATGGTTCGA TGAACCCGGA CGACCTGAAC
ATGAGCTGGT GCGTTGGCCG CAACAAGCCG TTCTCGTGGA TCGGCCTGCG TGGCATGAAC
CGCGAAGACT GCGTGCGTGA GAACCGCAAG CAGCTGGTGG GCCTGAAACC GGTCGACCCG
ACCAAGTGGC TGCCGGAAGG CGCCCAACTG GTGTTCGACC CGAAACAGCC GATCCCGATG
GACATGGTCG GCCACGTCAC CTCCAGCTAC GCGTCCAACT CCCTGGGCTA CTCGTTCGCC
ATGGGTGTGG TCAAAGGCGG CCTCAAGCGC ATGGGCGAGC GTGTCTACTC GCCGCAGGCG
GATGGCAGCG TGATCGAGGC GGAAATCGTG TCTTCGGTGT TCTTCGATCC GAAGGGTGAG
CGGCAGAACG TCTAA
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| Protein sequence | MSQTYRLASG GRIDRSKVLN FTFNGKTYQG YAGDSLAAAL LANGVDIVGR SFKYSRPRGI
IAAGTEEPNA ILQIGSSEAT QIPNVRATQQ ALYAGLVATS TNGWPNVNND VMGILGKVGG
SMMPPGFYYK TFMYPKSFWM TYEKYIRKAA GLGRAPLQND PDSYDYMNRH CDVLIVGAGP
AGLAAALAAA RSGARVILAD EQEEFGGSLL DTRETLDGKP AADWVNAVVK ELEGLPEVTL
LPRATVNGYH DHNFLTIHER LTDHLGDRAP IGQVRHRVHR VRAKRVVLAA GAHERPLVYG
NNDVPGNMLA GAVSTYVRRY GVAPGRKLVL STNNDHAYRA ALDWHDAGLQ VVAIADARHN
PRGSLVEEAR AKGIRILTSS AVIEAKGSKH VTGARVAAID VQAHKVTSPG EVLECDLIAS
SGGYSPIVHL ASHLGGRPVW RDDILGFVPG DAPQKRECVG GINGVYALGD VIADGFEGGV
RAATEAGFKA TVGTLPKTVA RKEEATVALF LVPHDKGTKG PKQFVDQQND VTAAGIELAT
REGFESVEHV KRYTALGFGT DQGKLGNING LAIAARSIGI TIPEMGTTMF RPNYTPVTFG
AVAGRHCGHL FEPVRFTALH AWHVKNGAEF EDVGQWKRPW YFPKAGEDIH AAVTRECKAV
RDSVGLLDAS TLGKIDIQGP DAREFLNRIY TNAWTKLDVG KARYGLMCKE DGMVFDDGVT
ACVGDNHFIM TTTTGGAARV LQWMELYHQT EWPELKVYFT SVTDHWATMT LSGPNSRKLL
SELTDIDMDK EAFPFMTWKE GNVGGVPARV FRISFTGELS YEVNVQANYA MGVLEQIIEA
GKKYNLTPYG TETMHVLRAE KGFIIVGQDT DGSMNPDDLN MSWCVGRNKP FSWIGLRGMN
REDCVRENRK QLVGLKPVDP TKWLPEGAQL VFDPKQPIPM DMVGHVTSSY ASNSLGYSFA
MGVVKGGLKR MGERVYSPQA DGSVIEAEIV SSVFFDPKGE RQNV
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