| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0323 |
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| Symbol | soxB |
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| ID | 1044020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 388128 |
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| End bp | 389378 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637143702 |
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| Product | sarcosine oxidase, beta subunit family |
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| Protein accession | NP_742490 |
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| Protein GI | 26987065 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.968117 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00249789 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAACGTT ACTCGGGCTT CGGCCTTTTC AAGCACTCCC TCAGCCACCA CGAAAACTGG
CAGCGCATGT GGCGCACGCC AACCCCTAAA AAGGTTTACG ACGTGGTCAT TGTCGGCGGT
GGCGGCCATG GCCTGGCCAC GGCCTACTAC CTGGCCAAAG AGCACGGCAT CACCAACGTC
GCCGTGATCG AGAAGGGCTA CCTGGGCGGC GGCAACACCG CCCGTAACAC CACCATCGTG
CGTTCCAACT ACCTGTGGGA CGAGTCGGCG CACCTGTACG AGCACGCCAT GAAGCTGTGG
GAGGGCCTGT CCCAGGACCT CAACTACAAC GTGATGTTCT CCCAGCGCGG TGTTTACAAC
CTCTGCCACA CCCTGCAGGA CATGCGTGAC TCCGAGCGTC GGGTCAGCGC CAACCGCCTC
AACGGCGTGG ATGGCGAGCT GCTGAACACT GCCCAGGTTG CGGCCGAAAT CCCGTACCTG
GACTGCTCGA AGAACACCCG CTACCCGATC CTCGGCGCCA CCGTACAGCG CCGTGGTGGC
GTTGCCCGTC ACGATGCCGT GGCCTGGGGC TTCGCCCGCG CTGCCGACGC CCTGGGCGTC
GACCTGATCC AGCAAACCGA AGTGATCGGC TTCCGCAAGG AAAACGGCGC GGTCATCGGT
GTGGAAACCA ACAAAGGCTT CATCGGCGCC AAGCGCGTCG GCGTGGTCAC CGCCGGTAAC
TCCGGGCACA TGGCCAAGCT GGCCGGCTTC CGCCTGCCGC TGGAATCGCA CCCGCTGCAA
GCGCTGGTAT CCGAGCCGAT CAAGCCGATC ATCGACAGCG TGATCATGTC CAACGCCGTA
CACGGCTACA TCAGCCAGTC CGACAAAGGC GACCTGGTGA TCGGTGCCGG TATCGACGGC
TGGGTCGGCT ACGGCCAGCG CGGTTCGTAC CCGGTGATCG AGCACACCCT GCAGGCCATC
GTCGAGATGT TCCCCAACCT GTCGCGTGTT CGCATGAACC GCCAGTGGGG CGGCATCGTA
GACACCTCGC CGGACGCCTG CCCGATCATC ACCAAAACCC CGGTCAAGAA CATGTTCTTC
AACTGCGGTT GGGGTACTGG CGGCTTCAAG GCGACCCCGG GTTCGGGCAA CGTCTTCGCC
GCGAGCCTGG CCAAGGGCGA AATGCATCCA CTGGCCGCGC CGTTCTCCAT GGACCGTTTC
TACAACGGCG CACTGATCGA CGAACACGGC GCCGCCGCCG TCGCCCACTA A
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| Protein sequence | MQRYSGFGLF KHSLSHHENW QRMWRTPTPK KVYDVVIVGG GGHGLATAYY LAKEHGITNV
AVIEKGYLGG GNTARNTTIV RSNYLWDESA HLYEHAMKLW EGLSQDLNYN VMFSQRGVYN
LCHTLQDMRD SERRVSANRL NGVDGELLNT AQVAAEIPYL DCSKNTRYPI LGATVQRRGG
VARHDAVAWG FARAADALGV DLIQQTEVIG FRKENGAVIG VETNKGFIGA KRVGVVTAGN
SGHMAKLAGF RLPLESHPLQ ALVSEPIKPI IDSVIMSNAV HGYISQSDKG DLVIGAGIDG
WVGYGQRGSY PVIEHTLQAI VEMFPNLSRV RMNRQWGGIV DTSPDACPII TKTPVKNMFF
NCGWGTGGFK ATPGSGNVFA ASLAKGEMHP LAAPFSMDRF YNGALIDEHG AAAVAH
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