Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0322 |
Symbol | glyA-1 |
ID | 1044019 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 386859 |
End bp | 388112 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637143701 |
Product | serine hydroxymethyltransferase |
Protein accession | NP_742489 |
Protein GI | 26987064 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.457346 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000286459 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTTCAGCA AGCAAGACCA GATCCAGGGT TACGACGATG CACTGCTGGC GGCGATGAAT GCCGAAGAAC AGCGCCAGGA AGATCACATC GAGCTGATCG CCTCGGAGAA CTACACCAGC AAGCGCGTCA TGCAGGCCCA AGGCAGCGGC CTGACCAACA AGTACGCCGA AGGCTACCCT GGCAAGCGTT ACTACGGTGG CTGCGAGCAC GTAGACAAGG TAGAAGCCCT GGCCATCGAG CGCGCCAAGC AGCTGTTCGG TGCCGACTAC GCAAACGTCC AACCGCACTC CGGCTCGTCG GCCAACGGCG CGGTCTACCT GGCCCTGCTG CAAGCCGGTG ACACCATCCT GGGCATGAGC CTGGCCCACG GCGGTCACCT GACCCACGGC GCCAAGGTGT CGTCCTCGGG CAAACTGTAC AACGCAGTCC AGTACGGCAT CGACACCAAC ACCGGCCTGA TCGACTACGA CGAAGTCGAG CGCCTGGCGG TCGAGCACAA GCCGAAAATG ATCGTTGCCG GTTTCTCGGC CTACTCCAAG ACCCTCGACT TCCCACGTTT CCGCGCCATC GCCGACAAGG TGGGCGCACT GCTGTTCGTC GACATGGCCC ACGTTGCCGG CCTGGTTGCC GCTGGCCTGT ACCCGAACCC GATCCCGTTC GCCGACGTGG TCACCACCAC TACCCACAAG ACCCTGCGCG GTCCGCGTGG CGGCCTGATC CTGGCCAAGT CGAACGAAGA GATCGAGAAA AAGCTGAACG CCGCTGTATT CCCGGGTGCC CAGGGTGGCC CGCTGATGCA CGTGATCGCT GCCAAGGCAG TGTGCTTCAA GGAAGCGCTG GAGCCTGGAT TCAAGGCCTA CCAGCAGCAA GTGATCGAAA ACGCCCAGGC CATGGCCCAG GTGTTCATCG ACCGTGGCTA CGATGTGGTT TCCGGTGGCA CCGACAACCA CCTGTTCCTG GTCAGCCTGA TCCGTCAGGG CCTGACTGGC AAAGACGCCG ACGCCGCCCT GGGTCGTGCG CATATCACCG TCAACAAGAA CGCCGTGCCG AACGACCCGC AGTCGCCGTT CGTCACTTCG GGCCTGCGTA TCGGCACCCC GGCCGTCACC ACCCGCGGCT TCAAGGTCGC CCAGTGCGTG GCCCTGGCTG GCTGGATTTG CGACATCCTC GACAACCTCG GTGACGCAGA CGTCGAAGCC GATGTGGCGA AGAACGTCGC GGCCCTGTGC GCAGATTTCC CTGTCTACCG CTGA
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Protein sequence | MFSKQDQIQG YDDALLAAMN AEEQRQEDHI ELIASENYTS KRVMQAQGSG LTNKYAEGYP GKRYYGGCEH VDKVEALAIE RAKQLFGADY ANVQPHSGSS ANGAVYLALL QAGDTILGMS LAHGGHLTHG AKVSSSGKLY NAVQYGIDTN TGLIDYDEVE RLAVEHKPKM IVAGFSAYSK TLDFPRFRAI ADKVGALLFV DMAHVAGLVA AGLYPNPIPF ADVVTTTTHK TLRGPRGGLI LAKSNEEIEK KLNAAVFPGA QGGPLMHVIA AKAVCFKEAL EPGFKAYQQQ VIENAQAMAQ VFIDRGYDVV SGGTDNHLFL VSLIRQGLTG KDADAALGRA HITVNKNAVP NDPQSPFVTS GLRIGTPAVT TRGFKVAQCV ALAGWICDIL DNLGDADVEA DVAKNVAALC ADFPVYR
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