Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0280 |
Symbol | |
ID | 1043890 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 337877 |
End bp | 338566 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637143658 |
Product | polar amino acid ABC transporter inner membrane subunit |
Protein accession | NP_742447 |
Protein GI | 26987022 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4160] ABC-type arginine/histidine transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.139552 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000156387 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATTGGG AAGTCATCTT CAAATGGCTG CCACGCCTGG CCGAAGGCGC GACCCTGACC CTTGAGCTGG TGGCCATCGC CGTGGTTGCC GGGTTGATCC TGGCCATACC GCTGGGCATC GCCCGCTCCT CGCGCCACTG GTACGTGCGC GCGGTGCCGT TCAGCTACAT TTTCTTCTTC CGTGGCACGC CGCTGCTGGT GCAATTGTTC CTGGTCTATT ACGGCCTGGC GCAGTTCGAT GCGGTGCGCT CCAGTTCGCT GTGGCCGTAC CTGCGCGATC CGTTCTGGTG CACGGTGCTG ACCATGACCC TGCACACCGC TGCGTACATC GCCGAGATTC TGCGTGGCGC GCTGCAGGCG ATCCCTAAAG GTGAGATTGA AGCGGCACGG GCGCTGGGCA TGTCGCGTGG CAAAACGCTG TTCTACATCA TGCTGCCACG CGCTGCGCGC ATCGGCCTGC CGGCGTACAG CAACGAAGTG ATCCTGATGC TCAAGGCCAG TGCCCTGGCC AGTACCGTGA CCCTGCTGGA ACTGACCGGC ATGGCCCGTA CCATCATCGC CCGCACCTAC CTGCCGGTGG AAATCTTCTT CGCCGCAGGC GTGTTCTACC TGGTGATCTC GTTCATGCTG GTGCAAGGCT TCAAGCTGCT GGAGCGCTGG TTGCGCGTGG ATGCCTGCCA AGGCCGCTGA
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Protein sequence | MNWEVIFKWL PRLAEGATLT LELVAIAVVA GLILAIPLGI ARSSRHWYVR AVPFSYIFFF RGTPLLVQLF LVYYGLAQFD AVRSSSLWPY LRDPFWCTVL TMTLHTAAYI AEILRGALQA IPKGEIEAAR ALGMSRGKTL FYIMLPRAAR IGLPAYSNEV ILMLKASALA STVTLLELTG MARTIIARTY LPVEIFFAAG VFYLVISFML VQGFKLLERW LRVDACQGR
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