| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0269 |
|---|
| Symbol | |
|---|
| ID | 1043865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | - |
|---|
| Start bp | 326063 |
|---|
| End bp | 327730 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637143646 |
|---|
| Product | glutamate synthase, large subunit, putative |
|---|
| Protein accession | NP_742436 |
|---|
| Protein GI | 26987011 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0069] Glutamate synthase domain 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.171701 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00246171 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACT CTCTTCCCAG CCGCTACGCC TGCCTCGTAC TCTGCCTTGT CTTCACTTTC
GCCAGCCTGC CCCTGCTGGC CCAACATGCC TGGCTGTGGC CGGTAACGCT GATCACCGCG
CTGCTCAGCC TGGTCGGTCT GAATGACCTG CGCCAAAGCC ACCATGCGGT GCGACGCAAC
TACCCGATCC TGGGCAATAT CCGTTACCTG ATCGAAACCA TCCGCCCGGA AATCCGCCAG
TACCTGATCG AAGGTGACGA CGACAAGCTG CCGTTCTCCC GCTCGCAACG CTCGCTGGTC
TACGCCCGCG CCAAGAACGA AAGCGCCGAG AAAGCGTTCG GCACGCTCAA CGACGCCTAC
AAACCTGGTT TCGAATTCAT CAGCCATTCC ATGCTACCGG TGGCCACGCC AGACCCTGCG
TCGTTCCGCA TTGCCATCGG CGGGCCGCAA TGCCGAATGC CCTACTCGGC CTCGATCTTC
AACATCTCGG CGATGAGTTT CGGCGCCCTC AGCGCCAACG CCATCGCCGC GCTCAACCGC
GGCGCGCGCA TGGGCCGGTT TGCCCATGAC ACTGGCGAAG GCAGCATCAG CCCTTACCAC
CGTGAACACG GCGGCGATCT GATCTGGGAA ATTGGCAGCG GCTACTTCGG CTGCCGCACC
GAGGACGGTC GTTTCGATCC ACAGCGCTTC GCCGAACAGG CCCGCTCGGC ACAGGTGAAG
ATGATCGAGA TCAAGCTCAG CCAGGGCGCC AAGCCTGGCC ACGGCGGCAT TTTACCGGGG
CACAAGGTCA GCCCCGAAAT TGCCGAGACC CGTGGCGTAC GCGCAGGCGA GGACTGCATC
TCGCCGGCGG CGCACAGCGC CTTCCGCACA CCGGTCGAGC TGCTGCAGTT CGTAGCCGGC
CTGCGCGAGC TTTCGGGCGG CAAGCCCGTG GGCTTCAAGT TCTGCCTGGG CCACCCTTGG
GAATTCATGG GCATTGCCAA GGCCATGCTC GCCACCGGCA TCACCCCTGA CTTCATCGTT
GTCGACGGCA AGGAAGGCGG CACCGGCGCG GCACCTCGCG AGTTCAGCGA CAACATGGGC
GTGCCGATGC GCGAAGGCTT GATGTTCGTG CACAACACGT TGGTCGGCCT GAACCTGCGC
TCCAGCATCC GCATTGGTGC GGCGGGCAAG ATCGTCAGCG CCTTCGACAT TGCCAGCGTA
TTGGCCATCG GCGCTGACTG GGTCAATTCG GCACGCGGTT TCATGTTTGC CATTGGCTGT
ATTCAGTCGC AGAGCTGCCA CACCAACAAG TGCCCGACCG GCGTGGCGAC CCAAGACCCT
CTGCGCCAGC GCGCCCTGGT GGTGCCAGAC AAGGCCGAGC GGGTAGCCAG CTTCCACCGC
AACACACTGC ACGCACTGGC CGAGATGCTG GCTGCCGCAG GCCTGGAGCA CCCTTCGGAG
CTCAAGCCCA AACACCTGGC ACGGCGCGTC AGCCCCAGCG AAATCGGGTT GTTTTCAGAC
TTGCACACAT TCCTCAAACC AGGTGAGTTA CTCAGTGGCT CGATCGAAAG CGAGTTTTAT
GCGCGGATGT GGCGGATGGC GCGTAGCGAC AGCTTTGCAC CGGAGACCGT AAGCCCAGCG
CCGGCTCAAA CAGTAACCGT TCGCCGAAAA GAAACAGCCC CGGCATAG
|
|---|
| Protein sequence | MKHSLPSRYA CLVLCLVFTF ASLPLLAQHA WLWPVTLITA LLSLVGLNDL RQSHHAVRRN
YPILGNIRYL IETIRPEIRQ YLIEGDDDKL PFSRSQRSLV YARAKNESAE KAFGTLNDAY
KPGFEFISHS MLPVATPDPA SFRIAIGGPQ CRMPYSASIF NISAMSFGAL SANAIAALNR
GARMGRFAHD TGEGSISPYH REHGGDLIWE IGSGYFGCRT EDGRFDPQRF AEQARSAQVK
MIEIKLSQGA KPGHGGILPG HKVSPEIAET RGVRAGEDCI SPAAHSAFRT PVELLQFVAG
LRELSGGKPV GFKFCLGHPW EFMGIAKAML ATGITPDFIV VDGKEGGTGA APREFSDNMG
VPMREGLMFV HNTLVGLNLR SSIRIGAAGK IVSAFDIASV LAIGADWVNS ARGFMFAIGC
IQSQSCHTNK CPTGVATQDP LRQRALVVPD KAERVASFHR NTLHALAEML AAAGLEHPSE
LKPKHLARRV SPSEIGLFSD LHTFLKPGEL LSGSIESEFY ARMWRMARSD SFAPETVSPA
PAQTVTVRRK ETAPA
|
|---|
| |