Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_0234 |
Symbol | oprE |
ID | 1043787 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | + |
Start bp | 288581 |
End bp | 289915 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637143612 |
Product | outer membrane porin |
Protein accession | NP_742402 |
Protein GI | 26986977 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0151017 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000172994 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTACAAGT CCAGCCTGGC TCTGGCCGTG GCACTGGGGG TTCTCGCCCA ACAAGCAGGC GCTGCCGGTT TCGTTGAGGA CAGCAAGCTG TCGCTCAGCT CGCGCACCAT GTACTTCAAC GATGACAACC GCGAAAGCGG TATTGACCAG AAAGAAAGTG GTCAGGGTTT CAAGCTCGAC TACCTGTCTG GCTTCACTCA AGGCACCGTA GGTTTTGGTG TTGATGTTCA AGCGCTGTGG GGCATTCACC TGGATGGTGG CCGTGGTAGC CGTCCAGATG CCAACAACAC GTTCTTCCCG AGTGACTCCG ATGGTTCGGC AGTCCACGAC TGGGCACGCA TTGGTGGTAA CGCCAAGGCT CGCTTCTCCA AAACCGAGGT CCACTACGGT AGCGCCCTGG CGCCTATGCT GCCGATCCTG GTCTCCAACG ATGGCCGTCT GCTTCCGCAG ACCTTCGAGG GTGGCACCCT CCAGTCGAAG GAAATCGACA ACCTGACCAT CAACGCGGGT CAACTGACCC ACGCCATGGG TCGTGCTTCG AGCAACCGTA CCGGTCTCTC CGTTTCCGGC GCCTTCCGCG ACAGCAACAA GTTCCAGTTC GCCGGCGGTG ATTACAAGCT CACCCCAGAC CTGACTCTGC AGTACTACTA CTCGAACCTG GAAGACTTCT ACAAGCAGCA CTTCCTGGGT GCGACCCACG TATTCAAGAT TGCCGACAAC CAGTCGTTCA AGACTGACCT GCGCTACTTC GACAGCAGCA GCGACGGCAA GAATGGCCAG ACTGGCTATG CCTTCGACAA CAACGGTGGC TACGCGAAGA ACTCGGGCGA GGTCGACAAC AAGACCTGGA GCGCCATGTT CACCTACACC CTGGGTGGCC ATGCGCTGAT GCTCGGTCAC CAGCAAGTGG GTGATGATGG TGGTTTCGTC TGGCTGAACC AAGGTAGCGT CCGTAAAGAC GGCTCCACTT CCTCTCTGGA AGGTAACGGC GGCGCGAGCT TCTACCTGTT CACCGATAGC ATGATCAACC AGTTTGCCCG CGCCGGTGAG AATACAACCT TTGGTCAGTA CTCCTATGAC TTTGCGGCTC TGGGTGTTCC AGGCCTGAAG GCTTCGGTGT CCTACCTGCG TGGTGATGAT GTTCGCAACA GGTCGGGTGA CGGCACCTAC AACGAATGGG AACGTGACGC CCGCGTCGAC TACACCCTTC AGGAAGGCAC TCTCAAAGGC CTGGGCTTCA GCCTGCGTCA AGGTGTCTAC CGTGGTAGCG GCGAAAGCGC CCTGGACAAA GACCAGACTC GCTTCATCGT GAACTACACT TACAACTTCC TGTAA
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Protein sequence | MYKSSLALAV ALGVLAQQAG AAGFVEDSKL SLSSRTMYFN DDNRESGIDQ KESGQGFKLD YLSGFTQGTV GFGVDVQALW GIHLDGGRGS RPDANNTFFP SDSDGSAVHD WARIGGNAKA RFSKTEVHYG SALAPMLPIL VSNDGRLLPQ TFEGGTLQSK EIDNLTINAG QLTHAMGRAS SNRTGLSVSG AFRDSNKFQF AGGDYKLTPD LTLQYYYSNL EDFYKQHFLG ATHVFKIADN QSFKTDLRYF DSSSDGKNGQ TGYAFDNNGG YAKNSGEVDN KTWSAMFTYT LGGHALMLGH QQVGDDGGFV WLNQGSVRKD GSTSSLEGNG GASFYLFTDS MINQFARAGE NTTFGQYSYD FAALGVPGLK ASVSYLRGDD VRNRSGDGTY NEWERDARVD YTLQEGTLKG LGFSLRQGVY RGSGESALDK DQTRFIVNYT YNFL
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