| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0229 |
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| Symbol | |
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| ID | 1043777 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 282591 |
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| End bp | 284552 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637143607 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | NP_742397 |
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| Protein GI | 26986972 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00896074 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACCCCC CGGTGTTCTA CTTTGCGGCG AGTTTCATCC TCATCTTTGG CCTGGTAGTC
ATCTCCAACC CGCAAGCCGC AGGTGACTGG TTGCTGGCAG CGCAGAACTG GGCGGCCAAC
ACGGTCGGCT GGTACTACAT GCTGGCGATG ACGCTGTACC TGGTCTTCGT GGTGGTCACC
GCCTTGTCTG GCTACGGCAA GATCAAACTC GGTGCCGACC ACGACGAACC CGAGTTCAGC
TACCTGTCGT GGGCCGGCAT GCTGTTCGCC GCCGGCATCA GCATCACGTT GTTCTTCTTC
TGTGTCTCCG AACCGCTGAC CCACATGCTG CAACCGCCGC AAGGCGAAGC CGGCACGGTC
GAGGCCGGGC GCCAGGCGAT GCAGATTCTG TTCCTGCACT GGGGCCTGCA TGGCTGGGGA
GTGTTCGCCT TCGTCGGCAT GGCATTGGCC TATTTTGCCT ACCGGCACAA CCTACCGCTG
GCCCTGCGTT CGGCGCTGTA CCCGCTGATT GGCAAGCGCA TCAACGGCCC GATCGGCTAT
GCGGTGGATG GCTTCGGCAT CATCGCCACG GTGTTCGGCC TGGGCGCCGA CATGGGCTTT
GGGGTGCTGC ATCTGAACGC CGGTCTGGAC TACCTGTTCG GTATCAGCCA CAGCCAGTGG
GTGCAGGTGA TCCTCATCAC CCTGATGATG GGCGCGGCTG TGGCCGTAGC CGTGGCCGGG
GTGGAGAAGG GGGTGCGGGT GATGAGCGAC ATCAACCTGT TCCTGGCCTG TGCGCTGCTG
CTGTTCGTGC TGTTCGCCGG GCCTACCCAG CACCTGTTCA ACACGCTGAT CCAGAACCTG
GGCGACTACC TGGGTGCGTT GCCGCGCAAG AGCTTCGACG TGTATGCCTA TGGTGAAAAC
CGTGGCTGGC TGGGCGGCTG GACCGTGTTC TACTGGGCCT GGTGGATTGC CTGGGCGCCG
TTCGTGGGCC TGTTCATCGC CCGCATCTCC CGTGGCCGTA CCATCCGCGA GTTCGTCTTT
GGCGTGCTGC TGATTCCGCT GGGCTTCACC CTGGCGTGGA TGTCGATCTT CGGCAACAGC
GCCCTGGACC AGGTGATAAA TCACGGCATG ACCGCACTGG GTCAGTCGGC GTTGGACAAC
CCATCGATGA GCCTGTACCT GCTGCTGGAA ACCTACCCCT GGAGCAAGGC AGTGATCGCC
ACCACGGTGT TCATCAGCTT CGTGTTCTTC GTCACCTCGG CCGACTCGGG CACCGTGGTG
CTGTCGACCT TGTCGGCCAA GGGTGGTGAC GCTGATGAAG ATGGGCCGAA CTGGCTGCGT
ATCTTTTGGG GGGCGATGAC TGCACTGATC ACCAGTGCGC TGTTGTTCGC TGGCAGCATC
GATTCGCTGA AGTCGGCAGT GGTGCTGACG TCGCTGCCGT TCTCGCTCAT TCTGCTGTGC
ATGATGTGGG GGCTGCACAA GGCGTTCTAC CTGGAGTCGC AGCGGCAGAT CGCGCAGATG
CACTCGCTGG CCCCGTTCGC CCAGTCACGT CGTGGTCGTG GCGGCTGGCG CCAGCGCCTG
AGCCAGGCAG TGCACTTCCC GTCGCGTGAT GAGGTGTACC GCTTCATGGA TGATGTGGTG
CGCCCGGCGA TTGCCGATGT GCGTGAAGTG TTCGAGCAGA AAGGCCTGGT ACTGATTACC
CAGGACGACC CTAGCCATGA CAACGTCAGC CTGAAGATCG GCCATGGCGA GGAACAGCCG
TTCATTTACC AGGTGCAGAT GCGTGGCTAT TTCACACCAT CGTTCGCCTT GGGGGGGCTG
GGTACGCAGG AGTTGAAGAA CCGCCGCTAT TACCGGGCGG AGGTGCACCT GAGCGAAGGC
AGCCAGAACT ATGACCTGGT GGGCTACAGC AAGGAGCAGA TCATCAACGA CATCCTCGAC
CAGTACGAGC GGCACATGCA GTACCTGCAC CTGGTCCGCT GA
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| Protein sequence | MNPPVFYFAA SFILIFGLVV ISNPQAAGDW LLAAQNWAAN TVGWYYMLAM TLYLVFVVVT
ALSGYGKIKL GADHDEPEFS YLSWAGMLFA AGISITLFFF CVSEPLTHML QPPQGEAGTV
EAGRQAMQIL FLHWGLHGWG VFAFVGMALA YFAYRHNLPL ALRSALYPLI GKRINGPIGY
AVDGFGIIAT VFGLGADMGF GVLHLNAGLD YLFGISHSQW VQVILITLMM GAAVAVAVAG
VEKGVRVMSD INLFLACALL LFVLFAGPTQ HLFNTLIQNL GDYLGALPRK SFDVYAYGEN
RGWLGGWTVF YWAWWIAWAP FVGLFIARIS RGRTIREFVF GVLLIPLGFT LAWMSIFGNS
ALDQVINHGM TALGQSALDN PSMSLYLLLE TYPWSKAVIA TTVFISFVFF VTSADSGTVV
LSTLSAKGGD ADEDGPNWLR IFWGAMTALI TSALLFAGSI DSLKSAVVLT SLPFSLILLC
MMWGLHKAFY LESQRQIAQM HSLAPFAQSR RGRGGWRQRL SQAVHFPSRD EVYRFMDDVV
RPAIADVREV FEQKGLVLIT QDDPSHDNVS LKIGHGEEQP FIYQVQMRGY FTPSFALGGL
GTQELKNRRY YRAEVHLSEG SQNYDLVGYS KEQIINDILD QYERHMQYLH LVR
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