| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_0218 |
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| Symbol | |
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| ID | 1043761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida KT2440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002947 |
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| Strand | + |
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| Start bp | 270099 |
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| End bp | 271994 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637143596 |
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| Product | sensory box protein |
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| Protein accession | NP_742386 |
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| Protein GI | 26986961 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.206215 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0206091 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGTTT CCGTTCGCGA CGCCTTGCGC ATGGCTGCGC TGTATGTGGT GCTCTCGATC
CTCTGGCTTG CGCTGGCGGA GGTGATGCTG CACAGCATGA CTGACGATCC CTTGGCACTG
ACCGTGGGGC GGCAGATCAA CGTGGTGGTC TGGGTGCTGC TCAGTGCCTT GCTGATCTAT
GTGTCGCGCG TGCGCCTGCT CAATTTCATC GGCCATGGCG CGCGTTTGCG TTGTGAAGAC
CGTGAACGGC TGCGCATGGC TGCCGCAGTG TTCGACAGTA CCCTCGAAGG TGTGCTGGTG
ACCGACCGCC AAGGCCTGAT CGTGCACGTC AATCGTGCCT TCATGCGCAT CACCGGCTAC
CAGCAGGATG AGGTTATCGG CCAGCGCCCG AGCAAGTTCA AGTCGGGCCA CCATGGCCTG
GCCTTCTACC AGGAGGTTTT CGCCACCCTG GCCGAGAAGG GCGAGTGGAG TGGTGAAATC
TGGAACCGGC GCAAAAGCGG GGAAATCTAC CCGCAGTGGC AGACCATTTG CGCCATTCGT
GATGACGAGG GTGAGCTCAG CCATTACGTG GCGGTGTTCA GTGACATCAG CGCCATCAAG
CATTCGGAGC AGGAGCTTGC CTACCTGGCC CACCACGACC CGCTGACTGG CCTGCCCAAC
CGCCTGCTGT TTACCGACCG GCTGGAGCAG GCATTGGCGG CGGCGCAGGC CAACAAGCGC
GGTTGCGCCT TGTTGCTGCT GGACCTGGAT CACTTCCAGA GCATAAACGA CGGCCTGGGC
CATACCATTG GCGACCAGTT GCTGAAGCTG GTGGGCGAGC GTCTGGGGGA GGTGTTGGGT
AACGGTGTGA CCCTGGCGCG CCTGGGCGGC GACGAATTCG GCGTGCTGGT CGAGAACTGC
CAGCAGGTCG GCCAGGCGGG CAAGCTGGCG CAGTGCATCA TCGAGCGTAT GCGTGAGCCG
TTTCAGTTCG ACGGCAATCG TCTGTTCATC AGCGCCAGCG TCGGAATCAG CCTTTACCCC
AGCGATGCCT TGGGTGCCGA GCAGTTGCTG CGCAATGCCG ACTCGGCGTT GTACAAGGCC
AAAAGCAACG GGCGGGCCTG CTATGCGCTG TACACCGAAG AGCTGACCGC CCACGCCCAG
CATCGGGTCG AGACCGCCGC TGAATTGCGT CGGGCCCTGG AGCAGGATGA ACTGCGGGTG
TACTTCCAGC CGGTACACGA CCTGGCGTCA GGCCGACAGG TCGGGGTCGA GACGCTGGTG
CGCTGGCAGC ACCCCAGGCG CGGTCTGGTA CCGCCGGGTG AGTTCATCCC GATTGCCGAA
CGCACCGGCC TGATTGCCGA GATCGATACC TGGGTGCTGC GCCAGGCCTG CCGGCAAATG
GTGCAGTGGC AGGCTCAAGG CCGGCAGCTG GCATTCGTGG GGGTGAACAT CTCCAGTCGC
CTGTTTGGCC AGCATGAGCT GTATCGGCAG GTAGCCGAAG TGCTGCACGA CACCGGCCTC
GCCCCGGCCT TGCTGGAGCT GGAAGTGACC GAAAGCGCGG TGATGGAAGA CCCTGAGGTG
GCGCTGGAGC AACTGCACCG CTTGCGCGAA CTGGGGGTGA CCCTGGCCAT CGACGACTTT
GGCACCGGGT ATTCGTCACT GCTGCGGCTC AAGCGTTTGC CGGTGCAGAA GCTGAAAATC
GACCAAGGGT TTGTGGCTGG GTTGCCAGTG GATGAAGACG ACATCGCCAT TGTGCGGGTG
ATCATCGCCT TGGCCCGTAG CATGGGGATG CAGGTGCATG CCGAGGGCAT CGAGCAGGCG
GAACAGGCCA GCTTCCTGCT GCAGGAGGAG TGCCAGTTGG GGCAGGGGTA CTGGTTCGGG
CGGCCAGTGC CGGCTGAGGA TCTTCGCTGG GATTGA
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| Protein sequence | MSVSVRDALR MAALYVVLSI LWLALAEVML HSMTDDPLAL TVGRQINVVV WVLLSALLIY
VSRVRLLNFI GHGARLRCED RERLRMAAAV FDSTLEGVLV TDRQGLIVHV NRAFMRITGY
QQDEVIGQRP SKFKSGHHGL AFYQEVFATL AEKGEWSGEI WNRRKSGEIY PQWQTICAIR
DDEGELSHYV AVFSDISAIK HSEQELAYLA HHDPLTGLPN RLLFTDRLEQ ALAAAQANKR
GCALLLLDLD HFQSINDGLG HTIGDQLLKL VGERLGEVLG NGVTLARLGG DEFGVLVENC
QQVGQAGKLA QCIIERMREP FQFDGNRLFI SASVGISLYP SDALGAEQLL RNADSALYKA
KSNGRACYAL YTEELTAHAQ HRVETAAELR RALEQDELRV YFQPVHDLAS GRQVGVETLV
RWQHPRRGLV PPGEFIPIAE RTGLIAEIDT WVLRQACRQM VQWQAQGRQL AFVGVNISSR
LFGQHELYRQ VAEVLHDTGL APALLELEVT ESAVMEDPEV ALEQLHRLRE LGVTLAIDDF
GTGYSSLLRL KRLPVQKLKI DQGFVAGLPV DEDDIAIVRV IIALARSMGM QVHAEGIEQA
EQASFLLQEE CQLGQGYWFG RPVPAEDLRW D
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